RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

20 rows where analysis = "blastn", bioproject = "PRJEB14803" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Discosea · 20 ✖

tax_clade 1

bioproject 1

  • PRJEB14803 · 20 ✖

analysis 1

  • blastn · 20 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1295756 1295756 PRJEB14803_P_NODE_562_length_1662_cov_17.866011_g466_i0 PRJEB14803 562 1662 17.866011 296.93310282 Cochliopodium arabianum 1676989 Discosea other_Eukaryota 1472 0   NTclustered gi|861685102|gb|KP244684.1| 1676989 g466 i0 97.89 48.3231046931408 853 14 51 4 184 1034 851 1 Cochliopodium arabianum voucher YT964 18S ribosomal RNA gene, partial sequence blastn 80313 1472 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium arabianum
2571301 2571301 PRJEB14803_P_NODE_25063_length_222_cov_2.796791_g24597_i0 PRJEB14803 25063 222 2.796791 6.20887602 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 145 3.16e-30   NTclustered gi|470455615|ref|XM_004340928.1| 1257118 g24597 i0 87.402 2.95045045045045 127 14 57 2 97 222 100 225 Acanthamoeba castellanii str. Neff ribosomal protein S23 (S12), putative (ACA1_232480), partial mRNA blastn 655 145 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
2571417 2571417 PRJEB14803_P_NODE_4603_length_652_cov_19.970827_g4213_i0 PRJEB14803 4603 652 19.970827 130.20979204 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 931 0   NTclustered gi|659103927|gb|KJ569727.1| 1512276 g4213 i0 93.681 53.7009202453988 633 23 94 11 35 650 1373 2005 Cochliopodium kieliense clone 9611 18S ribosomal RNA gene, partial sequence blastn 35013 931 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
2571436 2571436 PRJEB14803_P_NODE_5383_length_596_cov_183.705882_g4977_i0 PRJEB14803 5383 596 183.705882 1094.88705672 Ripella sp. 805 1217113 Discosea other_Eukaryota 872 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g4977 i0 94.718 95.4496644295302 568 19 95 10 1 565 560 1 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 56888 872 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
3847668 3847668 PRJEB14803_P_NODE_3424_length_769_cov_5.272480_g3084_i0 PRJEB14803 3424 769 5.27248 40.5453712 Paravannella minima 1443144 Discosea other_Eukaryota 778 0   NTclustered gi|571331049|gb|KF895376.1| 1443144 g3084 i0 86.667 97.0559167750325 705 91 91 3 67 769 829 126 Paravannella minima strain CCAP 1533/1 clone 1 actin gene, partial cds blastn 74636 778 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
4813650 4813650 PRJEB14803_P_NODE_3144_length_805_cov_2.987013_g2814_i0 PRJEB14803 3144 805 2.987013 24.04545465 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 616 2.289999999999999e-171   NTclustered gi|226347442|gb|FJ807261.1| 308475 g2814 i0 80.521 56.3913043478261 806 151 99 6 1 803 861 59 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 45395 619 0.995153473344103 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
5123998 5123998 PRJEB14803_P_NODE_8165_length_464_cov_1.689977_g7705_i0 PRJEB14803 8165 464 1.689977 7.84149328 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 257 8.900000000000001e-64   NTclustered gi|470390001|ref|XM_004334484.1| 1257118 g7705 i0 79.467 9.52155172413793 375 67 80 10 63 432 205 574 Acanthamoeba castellanii str. Neff GTP cyclohydrolase I, putative (ACA1_028540), partial mRNA blastn 4418 257 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6399502 6399502 PRJEB14803_P_NODE_1406_length_1206_cov_138.369769_g466_i1 PRJEB14803 1406 1206 138.369769 1668.73941414 Cochliopodium arabianum 1676989 Discosea other_Eukaryota 1399 0   NTclustered gi|861685102|gb|KP244684.1| 1676989 g466 i1 97.901 33.0439469320066 810 13 67 4 216 1023 44 851 Cochliopodium arabianum voucher YT964 18S ribosomal RNA gene, partial sequence blastn 39851 1399 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium arabianum
6399564 6399564 PRJEB14803_P_NODE_23046_length_235_cov_1.800000_g22580_i0 PRJEB14803 23046 235 1.8 4.23 Vexillifera fluvialis 1105343 Discosea other_Eukaryota 244 3.24e-60   NTclustered gi|354720323|gb|HQ687482.1| 1105343 g22580 i0 91.16 12.3829787234043 181 15 77 1 1 180 909 1089 Vexillifera fluvialis strain RR1 small subunit ribosomal RNA gene, partial sequence blastn 2910 244 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera fluvialis
6399607 6399607 PRJEB14803_P_NODE_30146_length_197_cov_1.833333_g29680_i0 PRJEB14803 30146 197 1.833333 3.61166601 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 191 3.46e-44   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g29680 i0 85.561 16.5939086294416 187 22 95 4 1 187 33955 33774 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 3269 191 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
6399683 6399683 PRJEB14803_P_NODE_5006_length_622_cov_20.935264_g4606_i0 PRJEB14803 5006 622 20.935264 130.21734208 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 789 0   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g4606 i0 91.03 59.6784565916399 602 29 96 16 2 597 586 4 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 37120 789 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
7673731 7673731 PRJEB14803_P_NODE_38227_length_170_cov_1.481481_g37761_i0 PRJEB14803 38227 170 1.481481 2.5185177 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 147 6.339999999999999e-31   NTclustered gi|470511027|ref|XM_004351555.1| 1257118 g37761 i0 100 7.18235294117647 79 0 46 0 84 162 6887 6809 Acanthamoeba castellanii str. Neff Dynein heavy chain protein (ACA1_396150), partial mRNA blastn 1221 147 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8948458 8948458 PRJEB14803_P_NODE_308_length_2031_cov_39.202405_g252_i0 PRJEB14803 308 2031 39.202405 796.20084555 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 3241 0   NTclustered gi|330902855|gb|JF298253.1| 1017091 g252 i0 96.631 39.7321516494338 1959 55 96 9 79 2031 4 1957 Cochliopodium larifeili clone 901 18S ribosomal RNA gene, partial sequence blastn 80696 3241 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
14049666 14049666 PRJEB14803_P_NODE_4692_length_646_cov_3.494272_g4301_i0 PRJEB14803 4692 646 3.494272 22.57299712 Cochliopodium crystalli 2652061 Discosea other_Eukaryota 1112 0   NTclustered gi|1758131113|gb|MN389532.1| 2652061 g4301 i0 100 86.3049535603715 602 0 93 0 1 602 602 1 Cochliopodium crystalli isolate YT379_6b cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial blastn 55753 1112 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium crystalli
17563685 17563685 PRJEB14803_P_NODE_434_length_1813_cov_419.975253_g358_i0 PRJEB14803 434 1813 419.975253 7614.15133689 Acanthamoeba 5754 Discosea other_Eukaryota 270 4.7399999999999994e-67   NTclustered gi|28194618|gb|AF479562.1| 29195 g358 i0 72.653 18.5835631549917 980 208 52 45 174 1116 1389 433 Acanthamoeba griffini strain S7 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 33692 270 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba griffini
17873215 17873215 PRJEB14803_P_NODE_8815_length_442_cov_27.326781_g8353_i0 PRJEB14803 8815 442 27.326781 120.78437202 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 171 1.13e-37   NTclustered gi|470515092|ref|XM_004352825.1| 1257118 g8353 i0 75.462 47.4660633484163 379 78 84 13 13 382 384 12 Acanthamoeba castellanii str. Neff ribosomal protein s24e, putative (ACA1_069330), partial mRNA blastn 20980 171 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
21698037 21698037 PRJEB14803_P_NODE_12418_length_354_cov_2.040752_g11953_i0 PRJEB14803 12418 354 2.040752 7.22426208 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 147 1.4899999999999998e-30   NTclustered gi|470418521|ref|XM_004337050.1| 1257118 g11953 i0 82.081 31.8531073446328 173 29 49 2 183 354 510 339 Acanthamoeba castellanii str. Neff cyclophylin, putative (ACA1_215460), partial mRNA blastn 11276 147 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
21698172 21698172 PRJEB14803_P_NODE_30418_length_196_cov_1.621118_g29952_i0 PRJEB14803 30418 196 1.621118 3.17739128 Paramoeba branchiphila 308475 Discosea other_Eukaryota 246 7.25e-61   NTclustered gi|226347442|gb|FJ807261.1| 308475 g29952 i0 89.286 99.9591836734694 196 21 100 0 1 196 837 1032 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 19592 246 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
21698205 21698205 PRJEB14803_P_NODE_38058_length_170_cov_3.259259_g37592_i0 PRJEB14803 38058 170 3.259259 5.5407403 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 87.9 3.9e-13   NTclustered gi|470448716|ref|XM_004340140.1| 1257118 g37592 i0 89.706 0.4 68 7 40 0 2 69 119 52 Acanthamoeba castellanii str. Neff peroxidase (ACA1_369000), partial mRNA blastn 68 87.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22973535 22973535 PRJEB14803_P_NODE_6339_length_540_cov_2.471287_g5897_i0 PRJEB14803 6339 540 2.471287 13.3449498 Paramoeba branchiphila 308475 Discosea other_Eukaryota 645 1.9099999999999993e-180   NTclustered gi|226347442|gb|FJ807261.1| 308475 g5897 i0 88.148 88.9574074074074 540 64 100 0 1 540 787 248 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 48037 645 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;