RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJEB14803" and tax_phylum = "Chloroflexota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJEB14803 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1295796 1295796 PRJEB14803_P_NODE_8882_length_440_cov_2.940741_g8419_i0 PRJEB14803 8882 440 2.940741 12.9392604 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 56.5 0.003   NTclustered gi|2874254133|emb|OY970218.1| 1672391 g8419 i0 83.333 0.545454545454545 66 6 14 4 376 437 527241 527305 MAG: uncultured Chloroflexia bacterium isolate MFD04716.bin.1.117 genome assembly, chromosome: 1 blastn 240 56.5 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
2571375 2571375 PRJEB14803_P_NODE_36643_length_175_cov_1.142857_g36177_i0 PRJEB14803 36643 175 1.142857 1.99999975 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 58.4 3.17e-4   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g36177 i0 100 3.25142857142857 31 0 22 0 9 39 10142046 10142076 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 569 58.4 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
5123847 5123847 PRJEB14803_P_NODE_26805_length_213_cov_1.140449_g26339_i0 PRJEB14803 26805 213 1.140449 2.42915637 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 56.5 0.001   NTclustered gi|2893358407|emb|OZ220698.1| 2026734 g26339 i0 82.432 0.71830985915493 74 4 37 3 115 179 51352 51279 MAG: Dehalococcoidia bacterium isolate 1c31877f-31fb-4be5-889e-2983ccd84c47 genome assembly, chromosome: 1 blastn 153 56.5 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
6399719 6399719 PRJEB14803_P_NODE_7686_length_481_cov_2.569507_g7230_i0 PRJEB14803 7686 481 2.569507 12.35932867 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 359 2.47e-94   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g7230 i0 80.247 101.089397089397 486 88 100 8 1 481 3494433 3494915 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 48624 359 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.
10224152 10224152 PRJEB14803_P_NODE_23429_length_232_cov_3.040609_g22963_i0 PRJEB14803 23429 232 3.040609 7.05421288 Tepidiformaceae bacterium 3022862 Bacteria Bacteria 52.8 0.021   NTclustered gi|2531948656|emb|OY282446.1| 3022862 g22963 i0 100 0.120689655172414 28 0 12 0 182 209 163205 163232 MAG: Tepidiformaceae bacterium genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Bacillati Chloroflexota Tepidiformia Tepidiformales Tepidiformaceae   Tepidiformaceae bacterium
14049728 14049728 PRJEB14803_P_NODE_912_length_1416_cov_3.089066_g771_i0 PRJEB14803 912 1416 3.089066 43.74117456 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 1254 0   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g771 i0 84.327 357.199858757062 1308 177 99 22 122 1416 3496359 3495067 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 505795 1254 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;