RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB14803" and tax_clade = "delta/epsilon subdivisions"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJEB14803 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2571469 2571469 PRJEB14803_P_NODE_7683_length_481_cov_2.795964_g7227_i0 PRJEB14803 7683 481 2.795964 13.44858684 uncultured delta proteobacterium 34034 Bacteria Bacteria 52.8 0.047   NTclustered gi|2874253659|emb|OY969087.1| 34034 g7227 i0 100 0.0582120582120582 28 0 6 0 41 68 3776134 3776107 MAG: uncultured delta proteobacterium isolate MFD01721.bin.c.1 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
17873027 17873027 PRJEB14803_P_NODE_24555_length_225_cov_3.257895_g24089_i0 PRJEB14803 24555 225 3.257895 7.33026375 uncultured delta proteobacterium 34034 Bacteria Bacteria 204 5.2199999999999997e-48   NTclustered gi|374854163|dbj|AP011765.1| 34034 g24089 i0 83.26 285.786666666667 227 33 100 4 1 225 15070 14847 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 64302 204 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;