RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJEB14664" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB14664 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21323 21323 PRJEB14664_P_NODE_801_length_1012_cov_3.553736_g734_i0 PRJEB14664 801 1012 3.553736 35.96380832 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 935 0   NTclustered gi|1369885|gb|L78441.1|SCM14332R 6183 g734 i0 91.387 42.3853754940711 685 56 68 3 173 856 1 683 Schistosoma mansoni 14-3-3-2 mRNA, 3' end of cds blastn 42894 935 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
12774841 12774841 PRJEB14664_P_NODE_4691_length_399_cov_1.824176_g4561_i0 PRJEB14664 4691 399 1.824176 7.27846224 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 204 9.97e-48   NTclustered gi|68479954|gb|DQ076149.1| 6182 g4561 i0 77.81 0.869674185463659 347 65 85 10 7 347 405 65 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 347 204 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
15323470 15323470 PRJEB14664_P_NODE_8593_length_269_cov_1.094017_g8463_i0 PRJEB14664 8593 269 1.094017 2.94290573 Hysteromorpha triloba 234889 Platyhelminthes Platyhelminthes 82.4 3.14e-11   NTclustered gi|1511118671|gb|MG770070.1| 234889 g8463 i0 83.721 0.319702602230483 86 14 32 0 8 93 423 508 Hysteromorpha triloba voucher 3LF-2754 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 86 82.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Diplostomida Diplostomidae Hysteromorpha Hysteromorpha triloba
16288448 16288448 PRJEB14664_P_NODE_1973_length_655_cov_3.016129_g1865_i0 PRJEB14664 1973 655 3.016129 19.75564495 Metazoa 33208 Platyhelminthes Platyhelminthes 1210 0   NTclustered gi|60687563|gb|AY914894.1| 6182 g1865 i0 100 100 655 0 100 0 1 655 663 9 Schistosoma japonicum unknown mRNA blastn 65500 1210 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
19146701 19146701 PRJEB14664_P_NODE_17116_length_167_cov_1.446970_g16986_i0 PRJEB14664 17116 167 1.44697 2.4164399 Schmidtea nova 163373 Platyhelminthes Platyhelminthes 106 1.06e-18   NTclustered gi|1465859732|gb|MG457271.1| 163373 g16986 i0 83.193 6.02994011976048 119 17 70 3 1 117 1036 1153 Schmidtea nova isolate MR3557 28S ribosomal RNA gene, partial sequence blastn 1007 106 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Schmidtea Schmidtea nova
19146707 19146707 PRJEB14664_P_NODE_17536_length_164_cov_1.565891_g17406_i0 PRJEB14664 17536 164 1.565891 2.56806124 Schistosoma haematobium 6185 Platyhelminthes Platyhelminthes 171 3.62e-38   NTclustered gi|2318767917|ref|XM_051215478.1| 6185 g17406 i0 85.366 89.2926829268293 164 24 100 0 1 164 116 279 Schistosoma haematobium Tubulin beta chain (Beta tubulin) (TUB2_2), mRNA blastn 14644 171 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma haematobium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;