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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJEB14664" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB14664 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2571178 2571178 PRJEB14664_P_NODE_8723_length_266_cov_1.558442_g8593_i0 PRJEB14664 8723 266 1.558442 4.14545572 Pristionchus maupasi 335527 Nematoda Nematoda 165 2.99e-36   NTclustered gi|150982229|gb|EF634703.1| 335527 g8593 i0 79.916 4.53007518796993 239 36 88 11 2 234 236 4 Pristionchus maupasi large subunit ribosomal protein 30 (rpl-30) mRNA, partial cds blastn 1205 165 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus maupasi
3847437 3847437 PRJEB14664_P_NODE_2324_length_602_cov_2.259259_g2211_i0 PRJEB14664 2324 602 2.259259 13.60073918 Strongyloides ratti 34506 Nematoda Nematoda 525 2.92e-144   NTclustered gi|1376147859|ref|XM_024654603.1| 34506 g2211 i0 82.508 280.503322259136 606 98 100 7 1 602 1542 941 Strongyloides ratti Polyubiquitin-C (SRAE_2000341300), partial mRNA blastn 168863 525 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
6399374 6399374 PRJEB14664_P_NODE_2386_length_593_cov_4.872760_g2272_i0 PRJEB14664 2386 593 4.87276 28.8954668 Stegelleta sp. JB-75 345507 Nematoda Nematoda 135 5.660000000000001e-27   NTclustered gi|76560679|gb|DQ145704.1| 345507 g2272 i0 76.604 32.8836424957842 265 50 43 12 52 308 102 362 Stegelleta sp. JB-75 28S ribosomal RNA gene, partial sequence blastn 19500 135 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Cephalobidae Stegelleta Stegelleta sp. JB-75
8948126 8948126 PRJEB14664_P_NODE_13128_length_200_cov_1.696970_g12998_i0 PRJEB14664 13128 200 1.69697 3.39394 Caenorhabditis brenneri 135651 Nematoda Nematoda 193 9.81e-45   NTclustered gi|189484012|gb|EU711255.1| 135651 g12998 i0 84.264 72.47 197 31 99 0 3 199 599 403 Caenorhabditis brenneri clone 4B7.08 glyceraldehyde-3-phosphate dehydrogenase (gpd-3) mRNA, partial cds blastn 14494 193 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis brenneri
12774787 12774787 PRJEB14664_P_NODE_17591_length_164_cov_1.240310_g17461_i0 PRJEB14664 17591 164 1.24031 2.0341084 Necator americanus 51031 Nematoda Nematoda 89.8 1.04e-13   NTclustered gi|2707584754|ref|XM_064198489.1| 51031 g17461 i0 85.882 1.72560975609756 85 10 51 2 23 106 129 46 Necator americanus uncharacterized protein (RB195_001614), partial mRNA blastn 283 89.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
16288444 16288444 PRJEB14664_P_NODE_1813_length_687_cov_3.144172_g1708_i0 PRJEB14664 1813 687 3.144172 21.60046164 Metazoa 33208 Nematoda Nematoda 569 1.53e-157   NTclustered gi|1972263928|ref|NM_171139.8| 6239 g1708 i0 81.686 385.186317321688 688 122 100 4 2 687 1546 861 Caenorhabditis elegans Ubiquitin-related (ubq-1), mRNA blastn 264623 571 0.996497373029772 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
17872744 17872744 PRJEB14664_P_NODE_10175_length_239_cov_0.980392_g10045_i0 PRJEB14664 10175 239 0.980392 2.34313688 Strongyloides ratti 34506 Nematoda Nematoda 191 4.36e-44   NTclustered gi|1376154927|ref|XM_024651418.1| 34506 g10045 i0 82.018 184.548117154812 228 37 95 4 9 234 10 235 Strongyloides ratti Histone H3 (SRAE_X000165500), partial mRNA blastn 44107 191 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
19146661 19146661 PRJEB14664_P_NODE_12416_length_208_cov_1.156069_g12286_i0 PRJEB14664 12416 208 1.156069 2.40462352 Caenorhabditis remanei 31234 Nematoda Nematoda 158 3.7499999999999998e-34   NTclustered gi|2445384510|ref|XM_053733110.1| 31234 g12286 i0 80.288 19.6394230769231 208 41 100 0 1 208 200 407 Caenorhabditis remanei uncharacterized protein (GCK72_019590), partial mRNA blastn 4085 158 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;