RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB14664" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB14664 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2571112 2571112 PRJEB14664_P_NODE_3183_length_505_cov_2.889362_g3061_i0 PRJEB14664 3183 505 2.889362 14.5912781 Platyamoeba placida 3454475 Discosea other_Eukaryota 658 0   NTclustered gi|33946348|gb|AY294153.1| 197527 g3061 i0 90.4 99.0594059405941 500 48 99 0 3 502 581 1080 Platyamoeba placida actin mRNA, partial cds blastn 50025 658 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
11189094 11189094 PRJEB14664_P_NODE_16849_length_169_cov_1.425373_g16719_i0 PRJEB14664 16849 169 1.425373 2.40888037 Vannella 95228 Discosea other_Eukaryota 313 5.859999999999999e-81   NTclustered gi|62865934|gb|AY929909.1| 325075 g16719 i0 100 100.781065088757 169 0 100 0 1 169 851 1019 Vannella sp. strain 4362V/II 18S small subunit ribosomal RNA gene, partial sequence blastn 17032 313 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain 4362V/II
11499179 11499179 PRJEB14664_P_NODE_12030_length_212_cov_1.830508_g11900_i0 PRJEB14664 12030 212 1.830508 3.88067696 Platyamoeba placida 3454475 Discosea other_Eukaryota 281 2.18e-71   NTclustered gi|33946348|gb|AY294153.1| 197527 g11900 i0 90.61 99.3066037735849 213 19 100 1 1 212 919 707 Platyamoeba placida actin mRNA, partial cds blastn 21053 281 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
17872881 17872881 PRJEB14664_P_NODE_5275_length_367_cov_20.689759_g5145_i0 PRJEB14664 5275 367 20.689759 75.93141553 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 204 9.09e-48   NTclustered gi|470521486|ref|XM_004353672.1| 1257118 g5145 i0 82.479 64.16621253406 234 39 63 2 99 331 99 331 Acanthamoeba castellanii str. Neff Histone H4, putative (ACA1_376700), partial mRNA blastn 23549 204 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;