RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJEB14664" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJEB14664 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1295313 1295313 PRJEB14664_P_NODE_10722_length_230_cov_1.784615_g10592_i0 PRJEB14664 10722 230 1.784615 4.1046145 Paludibaculum fermentans 1473598 Bacteria Bacteria 54.7 0.006   NTclustered gi|1929489624|gb|CP063849.1| 1473598 g10592 i0 96.875 0.139130434782609 32 1 14 0 143 174 1341340 1341371 Paludibaculum fermentans strain P105 chromosome, complete genome blastn 32 54.7 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae Paludibaculum Paludibaculum fermentans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;