RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB14175" and tax_phylum = "Synergistota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB14175 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26188657 26188657 PRJEB14175_P_NODE_263654_length_197_cov_17.875000_g261386_i0 PRJEB14175 263654 197 17.875 35.21375 Fretibacterium fastidiosum 651822 Bacteria Bacteria 139 1.27e-28   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g261386 i0 82.317 3.18274111675127 164 25 82 4 1 162 2209555 2209716 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 627 139 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
26425288 26425288 PRJEB14175_P_NODE_205663_length_224_cov_1.423313_g203396_i0 PRJEB14175 205663 224 1.423313 3.18822112 Thermanaerovibrio 81461 Bacteria Bacteria 176 1.13e-39   NTclustered gi|470485441|ref|NR_076701.1| 81462 g203396 i0 85.799 16.8258928571429 169 21 75 3 51 218 350 516 Thermanaerovibrio acidaminovorans strain Su883 23S ribosomal RNA gene, complete sequence blastn 3769 176 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae Thermanaerovibrio Thermanaerovibrio acidaminovorans

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;