RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB14175" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB14175 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25638455 25638455 PRJEB14175_P_NODE_134178_length_297_cov_19300.338983_g131911_i0 PRJEB14175 134178 297 19300.338983 57322.00677951 Catenomyces persicinus 281913 Fungi Fungi 481 2.97e-131   NTclustered gi|82398336|gb|DQ273789.1| 281913 g131911 i0 95.96 83.7575757575758 297 11 100 1 1 297 2001 2296 Catenomyces sp. JEL342 isolate AFTOL-ID 47 28S ribosomal RNA gene, partial sequence blastn 24876 481 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenomyces Catenomyces persicinus
26055929 26055929 PRJEB14175_P_NODE_80653_length_406_cov_10.223188_g78391_i0 PRJEB14175 80653 406 10.223188 41.50614328 Paraphysoderma sedebokerense 1500003 Fungi Fungi 313 1.62e-80   NTclustered gi|641483243|gb|KJ569526.1| 1500003 g78391 i0 82.609 91.0738916256158 368 50 89 14 1 363 388 30 Paraphysoderma sedebokerense isolate FD61 28S ribosomal RNA gene, partial sequence blastn 36976 313 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense
26328550 26328550 PRJEB14175_P_NODE_9135_length_1158_cov_7.285324_g7808_i0 PRJEB14175 9135 1158 7.285324 84.36405192 Catenariaceae sp. 3036389 Fungi Fungi 274 2.3099999999999993e-68   NTclustered gi|2468790846|gb|OQ702867.1| 3036389 g7808 i0 76.007 52.5155440414508 571 94 46 26 23 558 3692 4254 Catenariaceae sp. isolate PSC066 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 60813 274 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae   Catenariaceae sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;