RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJEB14175" and tax_clade = "marine Actinobacteria clade"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • marine Actinobacteria clade · 1 ✖

bioproject 1

  • PRJEB14175 · 1 ✖

analysis 1

  • blastn · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25508404 25508404 PRJEB14175_P_NODE_270457_length_189_cov_5.601562_g268189_i0 PRJEB14175 270457 189 5.601562 10.58695218 uncultured actinobacterium Rifle_16ft_4_minimus_9892 1665150 Bacteria Bacteria 65.8 2.08e-6   NTclustered gi|874577995|gb|KT007057.1| 1665150 g268189 i0 90.196 0.46031746031746 51 3 26 2 50 98 5272 5322 Uncultured actinobacterium Rifle_16ft_4_minimus_9892 genomic sequence blastn 87 65.8 1 Bacteria marine Actinobacteria clade Bacillati Actinomycetota Actinomycetes       uncultured actinobacterium Rifle_16ft_4_minimus_9892

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;