RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB14175" and tax_clade = "Candidatus Porisulfidus"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Candidatus Porisulfidus · 2 ✖

bioproject 1

  • PRJEB14175 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25644587 25644587 PRJEB14175_P_NODE_276674_length_176_cov_6.765217_g274406_i0 PRJEB14175 276674 176 6.765217 11.90678192 uncultured candidatus Porisulfidus sp. 3039487 Bacteria Bacteria 60.2 8.87e-5   NTclustered gi|2893356057|emb|OZ220480.1| 3039487 g274406 i0 97.222 0.715909090909091 36 0 39 1 133 168 1374472 1374506 MAG: uncultured candidatus Porisulfidus sp. isolate 164bb96d-58d1-42e1-9c94-80d65ec326bd genome assembly, chromosome: 1 blastn 126 60.2 1 Bacteria Candidatus Porisulfidus Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales     uncultured candidatus Porisulfidus sp.
26185705 26185705 PRJEB14175_P_NODE_190838_length_235_cov_13.747126_g188571_i0 PRJEB14175 190838 235 13.747126 32.3057461 uncultured candidatus Porisulfidus sp. 3039487 Bacteria Bacteria 97.1 9.59e-16   NTclustered gi|2893358403|emb|OZ220694.1| 3039487 g188571 i0 75.879 2.46808510638298 199 42 83 6 16 210 525478 525282 MAG: uncultured candidatus Porisulfidus sp. isolate d7aced61-d1d5-4481-893f-ca77f0084939 genome assembly, chromosome: 1 blastn 580 97.1 1 Bacteria Candidatus Porisulfidus Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales     uncultured candidatus Porisulfidus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;