RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJEB1404" and tax_phylum = "Arthropoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB1404 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21115 21115 PRJEB1404_S_NODE_3861_length_165_cov_2.146154_g3841_i0 PRJEB1404 3861 165 2.146154 3.5411541 Chelidurella thaleri 2546182 Arthropoda Arthropoda 54.7 0.004   NTclustered gi|2919606661|emb|OZ238400.1| 2546182 g3841 i0 92.5 0.242424242424242 40 0 22 2 49 85 29549173 29549212 Chelidura thaleri genome assembly, chromosome: 1 blastn 40 54.7 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Dermaptera Forficulidae Chelidurella Chelidurella thaleri
2570969 2570969 PRJEB1404_P_NODE_4083_length_173_cov_1.394366_g4057_i0 PRJEB1404 4083 173 1.394366 2.41225318 Timema genevievae 629358 Arthropoda Arthropoda 54.7 0.004   NTclustered gi|1963345359|emb|OE839378.1| 629358 g4057 i0 100 0.965317919075145 29 0 17 0 74 102 6912 6940 5_Tge_b3v08 blastn 167 54.7 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Phasmatodea Timematidae Timema Timema genevievae
3847311 3847311 PRJEB1404_S_NODE_2924_length_188_cov_83.215686_g2904_i0 PRJEB1404 2924 188 83.215686 156.44548968 Daphnia magna 35525 Arthropoda Arthropoda 67.6 5.75e-7   NTclustered gi|2154278280|ref|XM_045168335.1| 35525 g2904 i0 100 19.8989361702128 36 0 19 0 152 187 3911 3946 PREDICTED: Daphnia magna uncharacterized LOC116934977 (LOC116934977), transcript variant X3, mRNA blastn 3741 67.6 1 Eukaryota Opisthokonta Metazoa Arthropoda Branchiopoda Diplostraca Daphniidae Daphnia Daphnia magna
4813558 4813558 PRJEB1404_S_NODE_124_length_465_cov_31.625581_g104_i0 PRJEB1404 124 465 31.625581 147.05895165 root 1 Root_unresolved Root_unresolved 62.1 7.51e-5   NTclustered gi|2154278280|ref|XM_045168335.1| 35525 g104 i0 100 7.56129032258065 33 0 7 0 432 464 3914 3946 PREDICTED: Daphnia magna uncharacterized LOC116934977 (LOC116934977), transcript variant X3, mRNA blastn 3516 62.1 1 Eukaryota Opisthokonta Metazoa Arthropoda Branchiopoda Diplostraca Daphniidae Daphnia Daphnia magna
5123486 5123486 PRJEB1404_P_NODE_3005_length_205_cov_5.109195_g2979_i0 PRJEB1404 3005 205 5.109195 10.47384975 Teleiodes vulgella 1594352 Arthropoda Arthropoda 95.3 2.93e-15   NTclustered gi|2918374504|emb|OZ237942.1| 1594352 g2979 i0 98.148 14.019512195122 54 1 26 0 152 205 9450190 9450243 Teleiodes vulgella genome assembly, chromosome: 23 blastn 2874 95.3 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Lepidoptera Gelechiidae Teleiodes Teleiodes vulgella
8638798 8638798 PRJEB1404_S_NODE_1907_length_228_cov_35.922280_g1887_i0 PRJEB1404 1907 228 35.92228 81.9027984 root 1 Root_unresolved Root_unresolved 63.9 9.39e-6   NTclustered gi|2154278280|ref|XM_045168335.1| 35525 g1887 i0 100 16.3771929824561 34 0 15 0 2 35 3946 3913 PREDICTED: Daphnia magna uncharacterized LOC116934977 (LOC116934977), transcript variant X3, mRNA blastn 3734 63.9 1 Eukaryota Opisthokonta Metazoa Arthropoda Branchiopoda Diplostraca Daphniidae Daphnia Daphnia magna
16288410 16288410 PRJEB1404_S_NODE_2473_length_204_cov_77.153846_g2453_i0 PRJEB1404 2473 204 77.153846 157.39384584 root 1 Root_unresolved Root_unresolved 62.1 2.96e-5   NTclustered gi|2154278280|ref|XM_045168335.1| 35525 g2453 i0 100 17.2254901960784 33 0 16 0 2 34 3946 3914 PREDICTED: Daphnia magna uncharacterized LOC116934977 (LOC116934977), transcript variant X3, mRNA blastn 3514 62.1 1 Eukaryota Opisthokonta Metazoa Arthropoda Branchiopoda Diplostraca Daphniidae Daphnia Daphnia magna
22973066 22973066 PRJEB1404_P_NODE_219_length_495_cov_1901.547414_g5_i4 PRJEB1404 219 495 1901.547414 9412.6596993 Daphnia magna 35525 Arthropoda Arthropoda 58.4 0.001   NTclustered gi|2154278280|ref|XM_045168335.1| 35525 g5 i4 100 1.57777777777778 31 0 6 0 1 31 3940 3910 PREDICTED: Daphnia magna uncharacterized LOC116934977 (LOC116934977), transcript variant X3, mRNA blastn 781 58.4 1 Eukaryota Opisthokonta Metazoa Arthropoda Branchiopoda Diplostraca Daphniidae Daphnia Daphnia magna

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;