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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJEB1404" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 7 ✖

bioproject 1

  • PRJEB1404 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1295283 1295283 PRJEB1404_S_NODE_1162_length_267_cov_60.125000_g1142_i0 PRJEB1404 1162 267 60.125 160.53375 Orthoebolavirus sudanense 3052460 Viruses Viruses 63.9 1.13e-5   NTclustered gi|2471616984|gb|OQ673055.1| 186540 g1142 i0 97.297 12.6404494382022 37 1 14 0 231 267 37 1 Sudan ebolavirus isolate Ebolavirus/H.sapiens-wt/Uganda/2022/2022002394_C054, partial genome blastn 3375 63.9 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Filoviridae Orthoebolavirus Orthoebolavirus sudanense
16288411 16288411 PRJEB1404_S_NODE_2733_length_194_cov_96.201258_g2713_i0 PRJEB1404 2733 194 96.201258 186.63044052 Viruses 10239 Viruses Viruses 65.8 2.15e-6   NTclustered gi|2565357930|emb|OY628901.1| 2697049 g2713 i0 100 17.5103092783505 35 0 18 0 160 194 9639 9673 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 3397 65.8 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
17872718 17872718 PRJEB1404_S_NODE_2295_length_211_cov_74.392045_g2275_i0 PRJEB1404 2295 211 74.392045 156.96721495 Betacoronavirus pandemicum 3418604 Viruses Viruses 65.8 2.38e-6   NTclustered gi|2557648451|emb|OY677355.1| 2697049 g2275 i0 100 17.9478672985782 35 0 17 0 1 35 9675 9641 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 3787 65.8 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
20421776 20421776 PRJEB1404_S_NODE_2977_length_186_cov_223.569536_g2957_i0 PRJEB1404 2977 186 223.569536 415.83933696 Betacoronavirus pandemicum 3418604 Viruses Viruses 65.8 2.04e-6   NTclustered gi|2557648451|emb|OY677355.1| 2697049 g2957 i0 100 20.1451612903226 35 0 19 0 152 186 9641 9675 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 3747 65.8 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
21697816 21697816 PRJEB1404_S_NODE_3138_length_182_cov_127.251701_g3118_i0 PRJEB1404 3138 182 127.251701 231.59809582 Betacoronavirus pandemicum 3418604 Viruses Viruses 63.9 7.15e-6   NTclustered gi|2565362283|emb|OY635503.1| 2697049 g3118 i0 93.023 18.8846153846154 43 3 24 0 1 43 2243 2201 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 3437 63.9 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
23938067 23938067 PRJEB1404_S_NODE_1319_length_257_cov_81.684685_g1299_i0 PRJEB1404 1319 257 81.684685 209.92964045 Viruses 10239 Viruses Viruses 62.1 3.88e-5   NTclustered gi|2686256125|emb|OZ008436.1| 2587225 g1299 i0 100 13.2373540856031 33 0 13 0 1 33 1108 1076 Apocryptovirus menelaus Segment 2, partial CDS blastn 3402 62.1 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes Wolframvirales Narnaviridae Narnavirus Narnavirus sp.
25211784 25211784 PRJEB1404_S_NODE_1780_length_234_cov_248.070352_g1760_i0 PRJEB1404 1780 234 248.070352 580.48462368 Viruses 10239 Viruses Viruses 62.1 3.48e-5   NTclustered gi|2557657929|emb|OY694257.1| 2697049 g1760 i0 100 15.5940170940171 33 0 14 0 202 234 22477 22509 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 3649 62.1 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;