RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB12982" and tax_superkingdom = "Archaea"

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tax_phylum 2

tax_superkingdom 1

  • Archaea · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB12982 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9913840 9913840 PRJEB12982_P_NODE_12888_length_195_cov_1.397260_g12725_i0 PRJEB12982 12888 195 1.39726 2.724657 Archaea 2157 Archaea Archaea 355 1.15e-93   NTclustered gi|42406200|gb|AY522891.1| 29281 g12725 i0 99.487 100.815384615385 195 1 100 0 1 195 1239 1045 Uncultured crenarchaeote clone MBS4 16S ribosomal RNA gene, partial sequence blastn 19659 355 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
22972836 22972836 PRJEB12982_P_NODE_12519_length_198_cov_1.369128_g12356_i0 PRJEB12982 12519 198 1.369128 2.71087344 Candidatus Nitrososphaera evergladensis 1459637 Archaea Archaea 241 3.41e-59   NTclustered gi|665992324|gb|CP007174.1| 1459636 g12356 i0 89.474 17.2020202020202 190 20 96 0 1 190 1978458 1978647 Candidatus Nitrososphaera evergladensis SR1, complete genome blastn 3406 241 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Candidatus Nitrososphaera evergladensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;