RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB12982" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB12982 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3847159 3847159 PRJEB12982_P_NODE_17884_length_166_cov_0.871795_g17721_i0 PRJEB12982 17884 166 0.871795 1.4471797 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 200 4.69e-47   NTclustered gi|2621704341|emb|OY760937.1| 2499141 g17721 i0 88.554 4.85542168674699 166 18 100 1 1 166 3991817 3991981 MAG: Verrucomicrobiae bacterium isolate 066a7682-a1ac-48de-8761-1470dc9e5c3e genome assembly, chromosome: 1 blastn 806 200 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
7673144 7673144 PRJEB12982_P_NODE_17427_length_166_cov_1.299145_g17264_i0 PRJEB12982 17427 166 1.299145 2.1565807 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 165 1.7100000000000002e-36   NTclustered gi|2813917447|gb|CP170506.1| 2811408 g17264 i0 87.413 199.759036144578 143 18 86 0 5 147 3046308 3046450 MAG: Chthoniobacteraceae bacterium isolate SH-KS-3 chromosome, complete genome blastn 33160 165 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
10223775 10223775 PRJEB12982_P_NODE_3949_length_383_cov_2.571856_g3786_i0 PRJEB12982 3949 383 2.571856 9.85020848 Rubellicoccus peritrichatus 3080537 Bacteria Bacteria 357 6.91e-94   NTclustered gi|2605121622|gb|CP136920.1| 3080537 g3786 i0 83.721 226.480417754569 387 54 100 9 1 383 2163060 2163441 Rubellicoccus peritrichatus strain CR14 isolate coral tank chromosome, complete genome blastn 86742 357 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Cerasicoccaceae Rubellicoccus Rubellicoccus peritrichatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;