RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB12982" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB12982 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18837507 18837507 PRJEB12982_P_NODE_6695_length_282_cov_1.751073_g6532_i0 PRJEB12982 6695 282 1.751073 4.93802586 Caenorhabditis 6237 Nematoda Nematoda 294 3.91e-75   NTclustered gi|268559799|ref|XM_002646027.1| 6238 g6532 i0 87.549 92.9397163120567 257 28 90 4 23 277 1307 1053 Caenorhabditis briggsae Protein CBG07939 (CBG07939), partial mRNA blastn 26209 294 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
20421625 20421625 PRJEB12982_P_NODE_18937_length_164_cov_0.886957_g18774_i0 PRJEB12982 18937 164 0.886957 1.45460948 Strongyloides ratti 34506 Nematoda Nematoda 135 1.32e-27   NTclustered gi|1376138189|ref|XM_024649290.1| 34506 g18774 i0 82.317 1 164 21 98 6 1 160 1311 1470 Strongyloides ratti Probable glutamine--tRNA ligase (SRAE_1000223700), partial mRNA blastn 164 135 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
22662629 22662629 PRJEB12982_P_NODE_19098_length_164_cov_0.886957_g18935_i0 PRJEB12982 19098 164 0.886957 1.45460948 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 67.6 4.89e-7   NTclustered gi|946978308|gb|KP986799.1| 1748612 g18935 i0 87.931 1.71341463414634 58 6 35 1 1 57 373 430 Desmoscolecidae sp. 683_5-1500_X 28S ribosomal RNA gene, partial sequence blastn 281 67.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Desmoscolecida Desmoscolecidae   Desmoscolecidae sp. 683_5-1500_X

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;