RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJEB12982" and tax_phylum = "Mollusca"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB12982 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
985713 985713 PRJEB12982_P_NODE_8801_length_241_cov_1.328125_g8638_i0 PRJEB12982 8801 241 1.328125 3.20078125 Metazoa 33208 Mollusca Mollusca 187 5.699999999999998e-43   NTclustered gi|2693977111|ref|XM_063541780.1| 6551 g8638 i0 81.092 83.5477178423236 238 41 98 3 1 236 1517 1752 PREDICTED: Mytilus trossulus tubulin beta chain-like (LOC134682599), transcript variant X1, mRNA blastn 20135 187 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus trossulus
1295113 1295113 PRJEB12982_P_NODE_15822_length_173_cov_1.258065_g15659_i0 PRJEB12982 15822 173 1.258065 2.17645245 Littorina saxatilis 31220 Mollusca Mollusca 52.8 0.015   NTclustered gi|2868612622|ref|XM_070356381.1| 31220 g15659 i0 100 0.161849710982659 28 0 16 0 136 163 1774 1747 PREDICTED: Littorina saxatilis neuropeptide receptor 15-like (LOC138982990), transcript variant X1, mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Littorinimorpha Littorinidae Littorina Littorina saxatilis
2260962 2260962 PRJEB12982_P_NODE_16562_length_168_cov_1.428571_g16399_i0 PRJEB12982 16562 168 1.428571 2.39999928 Metazoa 33208 Mollusca Mollusca 311 2.11e-80   NTclustered gi|1928112764|gb|MT947788.1| 6523 g16399 i0 100 100 168 0 100 0 1 168 350 517 Lymnaea stagnalis isolate Lsta_434075 hypothetical protein mRNA, complete cds blastn 16800 311 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis
8638761 8638761 PRJEB12982_P_NODE_13787_length_188_cov_1.244604_g13624_i0 PRJEB12982 13787 188 1.244604 2.33985552 Metazoa 33208 Mollusca Mollusca 200 5.4399999999999985e-47   NTclustered gi|8895922|gb|AF234966.1|AF234966 61751 g13624 i0 87.791 93.9840425531915 172 20 91 1 17 188 274 104 Thysanoteuthis rhombus clone 31 actin gene, partial cds blastn 17669 200 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Oegopsida Thysanoteuthidae Thysanoteuthis Thysanoteuthis rhombus
11189024 11189024 PRJEB12982_P_NODE_19609_length_163_cov_0.894737_g19446_i0 PRJEB12982 19609 163 0.894737 1.45842131 Metazoa 33208 Mollusca Mollusca 296 5.68e-76   NTclustered gi|1928112766|gb|MT947789.1| 6523 g19446 i0 99.387 99.9509202453988 163 1 100 0 1 163 234 72 Lymnaea stagnalis isolate Lsta_466444 hypothetical protein mRNA, complete cds blastn 16292 296 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis
19146480 19146480 PRJEB12982_P_NODE_19896_length_163_cov_0.894737_g19733_i0 PRJEB12982 19896 163 0.894737 1.45842131 Mercenaria mercenaria 6596 Mollusca Mollusca 52.8 0.014   NTclustered gi|2441982876|ref|XM_045314236.2| 6596 g19733 i0 100 0.687116564417178 28 0 17 0 18 45 249 222 PREDICTED: Mercenaria mercenaria metallothionein 10-II-like (LOC123532698), mRNA blastn 112 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Veneridae Mercenaria Mercenaria mercenaria
21387812 21387812 PRJEB12982_P_NODE_12597_length_197_cov_2.060811_g12434_i0 PRJEB12982 12597 197 2.060811 4.05979767 Metazoa 33208 Mollusca Mollusca 359 8.98e-95   NTclustered gi|1928112764|gb|MT947788.1| 6523 g12434 i0 99.492 99.8477157360406 197 1 100 0 1 197 919 1115 Lymnaea stagnalis isolate Lsta_434075 hypothetical protein mRNA, complete cds blastn 19670 359 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis
21697731 21697731 PRJEB12982_P_NODE_4178_length_370_cov_1.267913_g4015_i0 PRJEB12982 4178 370 1.267913 4.6912781 Haliotis discus 36094 Mollusca Mollusca 56.5 0.003   NTclustered gi|1403874856|gb|MG011711.1| 42344 g4015 i0 96.97 0.0891891891891892 33 1 9 0 207 239 1140 1108 Haliotis discus hannai sex-determining region Y-box 9 (Sox9) mRNA, complete cds blastn 33 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis discus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;