RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB12982" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB12982 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20864 20864 PRJEB12982_P_NODE_1201_length_710_cov_2.093797_g1062_i0 PRJEB12982 1201 710 2.093797 14.8659587 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 344 1.0499999999999999e-89   NTclustered gi|657012367|gb|KF302531.1| 2850 g1062 i0 83.377 21.6169014084507 379 55 53 8 52 426 390 16 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 15348 344 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
3536301 3536301 PRJEB12982_P_NODE_2983_length_445_cov_1.722222_g2822_i0 PRJEB12982 2983 445 1.722222 7.6638879 Coscinodiscophyceae 33836 SAR_Eukaryotes SAR_Eukaryotes 228 6.669999999999997e-55   NTclustered gi|2074156200|gb|MW413905.1| 216802 g2822 i0 78.272 90.1528089887641 382 64 83 15 1 371 24229 24602 Guinardia delicatula mitochondrion, complete genome blastn 40118 228 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Rhizosoleniales Rhizosoleniaceae Guinardia Guinardia delicatula

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;