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contig_metadata

20 rows where analysis = "blastn", bioproject = "PRJEB12982" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 20 ✖

bioproject 1

  • PRJEB12982 · 20 ✖

analysis 1

  • blastn · 20 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20863 20863 PRJEB12982_P_NODE_11921_length_204_cov_0.890323_g11758_i0 PRJEB12982 11921 204 0.890323 1.81625892 Lentivirus humimdef1 3418650 Viruses Viruses 305 1.24e-78   NTclustered gi|1798179464|gb|MN694982.1| 11676 g11758 i0 93.627 94.8725490196078 204 13 100 0 1 204 1114 1317 HIV-1 isolate C115329 from Uganda gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; tat protein (tat) and rev protein (rev) genes, partial cds; vpu protein (vpu) gene, complete cds; and envelope glycoprotein (env) gene, partial cds blastn 19354 305 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
21080 21080 PRJEB12982_P_NODE_7681_length_261_cov_1.141509_g7518_i0 PRJEB12982 7681 261 1.141509 2.97933849 Lentivirus humimdef1 3418650 Viruses Viruses 372 1.61e-98   NTclustered gi|920764021|gb|KT283806.1| 11676 g7518 i0 92.366 100.463601532567 262 18 100 2 1 261 989 1249 HIV-1 isolate P1031_8.07_7A from USA envelope glycoprotein (env) gene, complete cds blastn 26221 372 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
1295132 1295132 PRJEB12982_P_NODE_16802_length_167_cov_0.974576_g16639_i0 PRJEB12982 16802 167 0.974576 1.62754192 Lentivirus humimdef1 3418650 Viruses Viruses 272 9.88e-69   NTclustered gi|254929527|gb|GQ333588.1| 11676 g16639 i0 96.364 98.7964071856287 165 6 99 0 1 165 264 100 HIV-1 isolate B08167A1 from Uganda envelope glycoprotein (env) gene, partial cds blastn 16499 272 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
1295276 1295276 PRJEB12982_P_NODE_9362_length_232_cov_1.114754_g9199_i0 PRJEB12982 9362 232 1.114754 2.58622928 Lentivirus humimdef1 3418650 Viruses Viruses 396 8.319999999999995e-106   NTclustered gi|2057218147|gb|MW124063.1| 11676 g9199 i0 97.414 99.9008620689655 232 6 100 0 1 232 687 918 HIV-1 clone SN 015 from Senegal gag protein (gag) gene, complete cds; and nonfunctional pol protein (pol) gene, partial sequence blastn 23177 396 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
2570815 2570815 PRJEB12982_P_NODE_17523_length_166_cov_0.871795_g17360_i0 PRJEB12982 17523 166 0.871795 1.4471797 Lentivirus humimdef1 3418650 Viruses Viruses 257 2.7400000000000003e-64   NTclustered gi|297341040|gb|HM204630.1| 11676 g17360 i0 94.578 99.644578313253 166 9 100 0 1 166 1232 1397 HIV-1 isolate CH080060.e.p1 from United Kingdom envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds blastn 16541 257 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
2570833 2570833 PRJEB12982_P_NODE_18423_length_165_cov_0.879310_g18260_i0 PRJEB12982 18423 165 0.87931 1.4508615 Lentivirus humimdef1 3418650 Viruses Viruses 222 9.939999999999999e-54   NTclustered gi|1829046909|gb|MT191137.1| 11676 g18260 i0 90.909 100 165 15 100 0 1 165 5529 5693 HIV-1 isolate B207_MOGPl10_L10 from USA, complete genome blastn 16500 222 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
2570853 2570853 PRJEB12982_P_NODE_19183_length_164_cov_0.886957_g19020_i0 PRJEB12982 19183 164 0.886957 1.45460948 Lentivirus humimdef1 3418650 Viruses Viruses 257 2.7e-64   NTclustered gi|16118339|gb|AY037277.1| 11676 g19020 i0 95.092 98.6463414634146 163 8 99 0 2 164 4641 4479 HIV-1 isolate ARMA037 from Argentina gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds blastn 16178 257 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
2570891 2570891 PRJEB12982_P_NODE_21163_length_161_cov_0.910714_g21000_i0 PRJEB12982 21163 161 0.910714 1.46624954 Lentivirus humimdef1 3418650 Viruses Viruses 265 1.5799999999999998e-66   NTclustered gi|1811632287|gb|MN791901.1| 11676 g21000 i0 96.273 98.8944099378882 161 6 100 0 1 161 3443 3283 HIV-1 isolate 30124v14_10 from Tanzania, partial genome blastn 15922 265 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
7673148 7673148 PRJEB12982_P_NODE_17687_length_166_cov_0.871795_g17524_i0 PRJEB12982 17687 166 0.871795 1.4471797 Lentivirus humimdef1 3418650 Viruses Viruses 289 9.729999999999999e-74   NTclustered gi|33088439|gb|AY248386.1| 11676 g17524 i0 98.182 97.2710843373494 165 3 99 0 1 165 429 265 HIV-1 isolate 01SPLP5 gag protein gene, partial cds blastn 16147 289 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
8947920 8947920 PRJEB12982_P_NODE_17808_length_166_cov_0.871795_g17645_i0 PRJEB12982 17808 166 0.871795 1.4471797 Lentivirus humimdef1 3418650 Viruses Viruses 268 1.27e-67   NTclustered gi|86560173|gb|DQ354115.1| 11676 g17645 i0 95.783 99.7710843373494 166 7 100 0 1 166 5512 5347 HIV-1 isolate M005 subtype CRF01_AE/B from Thailand gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds blastn 16562 268 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
10223689 10223689 PRJEB12982_P_NODE_17449_length_166_cov_1.102564_g17286_i0 PRJEB12982 17449 166 1.102564 1.83025624 Lentivirus humimdef1 3418650 Viruses Viruses 263 5.9e-66   NTclustered gi|24753971|gb|AF538304.1| 11676 g17286 i0 95.181 92.6204819277108 166 8 100 0 1 166 6955 6790 HIV-1 clone C24 from Australia gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds blastn 15375 263 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
11498852 11498852 PRJEB12982_P_NODE_10490_length_218_cov_0.928994_g10327_i0 PRJEB12982 10490 218 0.928994 2.02520692 Lentivirus humimdef1 3418650 Viruses Viruses 381 2.1599999999999994e-101   NTclustered gi|222144965|gb|FJ473615.1| 11676 g10327 i0 98.165 100 218 4 100 0 1 218 813 596 HIV-1 isolate OXSC167 from United Kingdom gag protein (gag) gene, partial cds blastn 21800 381 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
11498970 11498970 PRJEB12982_P_NODE_17990_length_166_cov_0.871795_g17827_i0 PRJEB12982 17990 166 0.871795 1.4471797 Lentivirus humimdef1 3418650 Viruses Viruses 274 2.73e-69   NTclustered gi|51980229|gb|AY612637.1| 11676 g17827 i0 96.386 112.975903614458 166 6 100 0 1 166 362 197 HIV-1 isolate PT2695 from Portugal, complete genome blastn 18754 274 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
15323054 15323054 PRJEB12982_P_NODE_13193_length_193_cov_0.951389_g13030_i0 PRJEB12982 13193 193 0.951389 1.83618077 Lentivirus humimdef1 3418650 Viruses Viruses 302 1.5e-77   NTclustered gi|2567180131|gb|OR246644.1| 11676 g13030 i0 94.819 100 193 10 100 0 1 193 5553 5745 HIV-1 isolate MRC004_Cluster26_size-14_count-3 from Belgium defective genome blastn 19300 302 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
15323223 15323223 PRJEB12982_P_NODE_7233_length_270_cov_1.022624_g7070_i0 PRJEB12982 7233 270 1.022624 2.7610848 Lentivirus humimdef1 3418650 Viruses Viruses 374 4.6499999999999986e-99   NTclustered gi|1061889441|gb|KX693154.1| 11676 g7070 i0 91.575 101.011111111111 273 20 100 3 1 270 747 1019 HIV-1 isolate 2358-0-13 from China envelope glycoprotein (env) gene, complete cds blastn 27273 374 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
16597745 16597745 PRJEB12982_P_NODE_17174_length_167_cov_0.864407_g17011_i0 PRJEB12982 17174 167 0.864407 1.44355969 Lentivirus humimdef1 3418650 Viruses Viruses 196 6.12e-46   NTclustered gi|1311871712|gb|MF988861.1| 11676 g17011 i0 90.066 91.3892215568862 151 15 90 0 17 167 176 26 HIV-1 isolate H4_1_18 from Spain envelope glycoprotein (env) gene, partial cds blastn 15262 196 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
17872627 17872627 PRJEB12982_P_NODE_21195_length_161_cov_0.910714_g21032_i0 PRJEB12982 21195 161 0.910714 1.46624954 Lentivirus humimdef1 3418650 Viruses Viruses 276 7.29e-70   NTclustered gi|1041501128|gb|KX129489.1| 11676 g21032 i0 97.516 100 161 4 100 0 1 161 1957 2117 HIV-1 isolate IC.790.L.E5 from USA envelope glycoprotein (env) gene, partial cds blastn 16100 276 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
20421561 20421561 PRJEB12982_P_NODE_15757_length_174_cov_0.864000_g15594_i0 PRJEB12982 15757 174 0.864 1.50336 Lentivirus humimdef1 3418650 Viruses Viruses 252 1.34e-62   NTclustered gi|508083149|gb|KC699001.1| 11676 g15594 i0 93.491 93.1724137931034 169 11 97 0 6 174 176 8 HIV-1 isolate 1644 from France envelope glycoprotein (env) gene, complete cds blastn 16212 252 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
21387820 21387820 PRJEB12982_P_NODE_17577_length_166_cov_0.871795_g17414_i0 PRJEB12982 17577 166 0.871795 1.4471797 Lentivirus 11646 Viruses Viruses 292 7.52e-75   NTclustered gi|63097046|gb|AY901572.1| 11676 g17414 i0 98.193 99.9638554216867 166 3 100 0 1 166 201 36 HIV-1 isolate 954 protease (pol) gene, partial cds blastn 16594 292 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
22973063 22973063 PRJEB12982_P_NODE_9899_length_225_cov_0.926136_g9736_i0 PRJEB12982 9899 225 0.926136 2.083806 Lentivirus humimdef1 3418650 Viruses Viruses 388 1.34e-103   NTclustered gi|1243362010|gb|MF356742.1| 11676 g9736 i0 97.778 99.1644444444444 225 5 100 0 1 225 953 1177 HIV-1 isolate A585_clon1 from Argentina gag protein (gag) gene, partial cds blastn 22312 388 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;