RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJEB12982" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 9 ✖

bioproject 1

  • PRJEB12982 · 9 ✖

analysis 1

  • blastn · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7673132 7673132 PRJEB12982_P_NODE_16927_length_167_cov_0.864407_g16764_i0 PRJEB12982 16927 167 0.864407 1.44355969 Auxenochlorella protothecoides 3075 Plants Plants 302 1.2600000000000001e-77   NTclustered gi|760439036|ref|XM_011398285.1| 3075 g16764 i0 99.398 0.994011976047904 166 1 99 0 1 166 168 333 Auxenochlorella protothecoides hypothetical protein partial mRNA blastn 166 302 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
8947846 8947846 PRJEB12982_P_NODE_12968_length_194_cov_2.441379_g12805_i0 PRJEB12982 12968 194 2.441379 4.73627526 Monoraphidium neglectum 145388 Plants Plants 132 2.09e-26   NTclustered gi|926787363|ref|XM_014046702.1| 145388 g12805 i0 90.099 12.0824742268041 101 10 52 0 1 101 793 693 Monoraphidium neglectum Calreticulin Flags: Precursor mRNA blastn 2344 132 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
11189030 11189030 PRJEB12982_P_NODE_21169_length_161_cov_0.910714_g21006_i0 PRJEB12982 21169 161 0.910714 1.46624954 Eukaryota 2759 Plants Plants 217 4.48e-52   NTclustered gi|371782091|emb|HE610123.1| 3107 g21006 i0 92.308 96.8944099378882 156 7 97 3 1 156 5112 4962 Hydrodictyon reticulatum 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain M2243 blastn 15600 217 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Hydrodictyaceae Hydrodictyon Hydrodictyon reticulatum
12774648 12774648 PRJEB12982_P_NODE_7871_length_257_cov_2.096154_g7708_i0 PRJEB12982 7871 257 2.096154 5.38711578 Chlamydomonas incerta 51695 Plants Plants 174 4.78e-39   NTclustered gi|74272614|gb|DQ122872.1| 51695 g7708 i0 79.518 4.6147859922179 249 47 96 4 1 247 357 603 Chlamydomonas incerta mitochondrial ADP/ATP translocator (ANT) mRNA, complete cds; nuclear gene for mitochondrial product blastn 1186 174 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
15323118 15323118 PRJEB12982_P_NODE_17953_length_166_cov_0.871795_g17790_i0 PRJEB12982 17953 166 0.871795 1.4471797 Chlamydomonas reinhardtii 3055 Plants Plants 135 1.34e-27   NTclustered gi|2082256823|ref|XM_001690323.2| 3055 g17790 i0 83.803 4.58433734939759 142 23 86 0 25 166 697 556 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_10g439150v5), mRNA blastn 761 135 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
16597751 16597751 PRJEB12982_P_NODE_17514_length_166_cov_0.871795_g17351_i0 PRJEB12982 17514 166 0.871795 1.4471797 Auxenochlorella protothecoides 3075 Plants Plants 300 4.5e-77   NTclustered gi|760436786|ref|XM_011397160.1| 3075 g17351 i0 99.394 0.993975903614458 165 1 99 0 2 166 423 259 Auxenochlorella protothecoides putative leucine-rich repeat receptor-like protein kinase partial mRNA blastn 165 300 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
17872445 17872445 PRJEB12982_P_NODE_10175_length_221_cov_1.866279_g10012_i0 PRJEB12982 10175 221 1.866279 4.1244765900000004 Auxenochlorella protothecoides 3075 Plants Plants 272 1.38e-68   NTclustered gi|760446256|ref|XM_011401895.1| 3075 g10012 i0 100 0.841628959276018 147 0 67 0 1 147 147 1 Auxenochlorella protothecoides hypothetical protein partial mRNA blastn 186 272 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
19146538 19146538 PRJEB12982_P_NODE_5096_length_331_cov_1.645390_g4933_i0 PRJEB12982 5096 331 1.64539 5.4462409 Auxenochlorella protothecoides 3075 Plants Plants 492 1.55e-134   NTclustered gi|760449952|ref|XM_011403743.1| 3075 g4933 i0 99.265 0.821752265861027 272 2 82 0 1 272 272 1 Auxenochlorella protothecoides hypothetical protein partial mRNA blastn 272 492 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
22972920 22972920 PRJEB12982_P_NODE_18199_length_165_cov_0.879310_g18036_i0 PRJEB12982 18199 165 0.87931 1.4508615 Auxenochlorella protothecoides 3075 Plants Plants 305 9.59e-79   NTclustered gi|760441632|ref|XM_011399583.1| 3075 g18036 i0 100 1 165 0 100 0 1 165 291 455 Auxenochlorella protothecoides hypothetical protein partial mRNA blastn 165 305 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;