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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJEB12982" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 11 ✖

bioproject 1

  • PRJEB12982 · 11 ✖

analysis 1

  • blastn · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2570782 2570782 PRJEB12982_P_NODE_15323_length_177_cov_1.117188_g15160_i0 PRJEB12982 15323 177 1.117188 1.97742276 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 56.5 0.001   NTclustered gi|470375882|ref|XM_004333185.1| 1257118 g15160 i0 100 0.988700564971751 30 0 17 0 146 175 231 202 Acanthamoeba castellanii str. Neff ubiquitin domain containing protein (ACA1_389410), partial mRNA blastn 175 56.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
4813545 4813545 PRJEB12982_P_NODE_21524_length_153_cov_2.913462_g21361_i0 PRJEB12982 21524 153 2.913462 4.45759686 Elardia 2681632 Tubulinea other_Eukaryota 189 9.16e-44   NTclustered gi|304308793|gb|HM853729.1| 497998 g21361 i0 88.889 98.3529411764706 153 17 100 0 1 153 193 41 Arcella hemisphaerica strain red clone act42 actin gene, partial cds blastn 15048 189 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Arcellidae Arcella Arcella hemisphaerica
5123377 5123377 PRJEB12982_P_NODE_20045_length_162_cov_2.247788_g19882_i0 PRJEB12982 20045 162 2.247788 3.64141656 Ripella sp. 1973050 Discosea other_Eukaryota 272 9.51e-69   NTclustered gi|2666517888|gb|PP258999.1| 1973050 g19882 i0 96.933 97.1604938271605 163 4 100 1 1 162 244 406 Ripella sp. strain CHIESE83/1 small subunit ribosomal RNA gene, partial sequence blastn 15740 272 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp.
5123408 5123408 PRJEB12982_P_NODE_3605_length_404_cov_1.292958_g3442_i0 PRJEB12982 3605 404 1.292958 5.22355032 Heterostelium album 2086695 Evosea other_Eukaryota 272 2.73e-68   NTclustered gi|1160557950|ref|XM_020575808.1| 670386 g3442 i0 85.441 128.170792079208 261 38 65 0 2 262 1072 1332 Polysphondylium pallidum PN500 ubiquitin (ubqI), partial mRNA blastn 51781 272 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
9913846 9913846 PRJEB12982_P_NODE_1488_length_639_cov_1.967797_g1343_i0 PRJEB12982 1488 639 1.967797 12.57422283 Acanthamoeba 5754 Discosea other_Eukaryota 244 9.76e-60   NTclustered gi|28194618|gb|AF479562.1| 29195 g1343 i0 76.724 44.4100156494523 464 92 72 15 1 457 887 433 Acanthamoeba griffini strain S7 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 28378 244 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba griffini
11498906 11498906 PRJEB12982_P_NODE_14030_length_186_cov_1.153285_g13867_i0 PRJEB12982 14030 186 1.153285 2.1451101 Cochliopodium minus 313997 Discosea other_Eukaryota 237 4.09e-58   NTclustered gi|330902895|gb|JF298272.1| 313997 g13867 i0 91.813 93.0268817204301 171 12 91 2 4 173 935 1104 Cochliopodium minus clone 5207 actin gene, partial cds blastn 17303 237 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
12774566 12774566 PRJEB12982_P_NODE_1991_length_553_cov_2.670635_g1832_i0 PRJEB12982 1991 553 2.670635 14.76861155 Ripella sp. GP2 1217115 Discosea other_Eukaryota 874 0   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g1832 i0 95.332 99.5840867992767 557 15 100 7 1 553 12 561 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 55070 874 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
14049198 14049198 PRJEB12982_P_NODE_8552_length_245_cov_1.040816_g8389_i0 PRJEB12982 8552 245 1.040816 2.5499992 Cryptodifflugia oviformis 1165352 Tubulinea other_Eukaryota 398 2.47e-106   NTclustered gi|2517949732|gb|OR125031.1| 1165352 g8389 i0 96.653 56.0081632653061 239 8 98 0 7 245 710 948 Cryptodifflugia oviformis isolate strain_6 small subunit ribosomal RNA gene, partial sequence blastn 13722 398 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia oviformis
16288393 16288393 PRJEB12982_P_NODE_4353_length_362_cov_1.690096_g4190_i0 PRJEB12982 4353 362 1.690096 6.11814752 Ripella 1217112 Discosea other_Eukaryota 564 3.57e-156   NTclustered gi|399764203|gb|JQ271714.1| 1217114 g4190 i0 96.765 94.2845303867403 340 8 94 2 15 353 1591 1254 Ripella sp. DP13 18S ribosomal RNA gene, partial sequence blastn 34131 568 0.992957746478873 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. DP13
19146597 19146597 PRJEB12982_P_NODE_9576_length_229_cov_1.133333_g9413_i0 PRJEB12982 9576 229 1.133333 2.59533257 Cochliopodium minus 313997 Discosea other_Eukaryota 322 1.41e-83   NTclustered gi|330902862|gb|JF298257.1| 313997 g9413 i0 92.544 8.87772925764192 228 11 99 6 3 229 370 148 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 2033 322 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
21697582 21697582 PRJEB12982_P_NODE_12758_length_196_cov_1.387755_g12595_i0 PRJEB12982 12758 196 1.387755 2.7199998 Telaepolella tubasferens 1346289 Evosea other_Eukaryota 246 7.25e-61   NTclustered gi|167859711|gb|EU273435.1| 1346289 g12595 i0 89.286 96.5663265306122 196 21 100 0 1 196 357 162 Telaepolella tubasferens clone 1 actin gene, partial cds blastn 18927 246 1 Eukaryota Amoebozoa   Evosea Variosea   Flamellidae Telaepolella Telaepolella tubasferens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;