RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB12366" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB12366 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20816 20816 PRJEB12366_P_NODE_8221_length_272_cov_1.350211_g8031_i0 PRJEB12366 8221 272 1.350211 3.67257392 Neobodo designis 312471 Euglenozoa other_Eukaryota 503 5.729999999999998e-138   NTclustered gi|1172045910|gb|KY859412.1| 312471 g8031 i0 100 96.4816176470588 272 0 100 0 1 272 477 748 Neobodo designis breed flagellate small subunit ribosomal RNA gene, partial sequence blastn 26243 503 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo designis
15322945 15322945 PRJEB12366_P_NODE_18093_length_162_cov_1.259843_g17903_i0 PRJEB12366 18093 162 1.259843 2.04094566 Neobodo designis 312471 Euglenozoa other_Eukaryota 294 2.03e-75   NTclustered gi|116222274|gb|DQ980523.1| 312471 g17903 i0 99.383 107.135802469136 162 1 100 0 1 162 424 585 Neobodo designis clone ndtub2 beta tubulin gene, partial cds blastn 17356 294 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo designis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;