RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB12366" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 2 ✖

bioproject 1

  • PRJEB12366 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20112227 20112227 PRJEB12366_S_NODE_2376_length_174_cov_3.050360_g2368_i0 PRJEB12366 2376 174 3.05036 5.3076264 Eukaryota 2759 Plants Plants 322 1.01e-83   NTclustered gi|1714003650|gb|MN243923.1| 3079 g2368 i0 100 100.114942528736 174 0 100 0 1 174 685 512 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 17420 322 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
20421441 20421441 PRJEB12366_P_NODE_4777_length_383_cov_1.704023_g4587_i0 PRJEB12366 4777 383 1.704023 6.52640809 Chlamydomonas reinhardtii 3055 Plants Plants 276 1.99e-69   NTclustered gi|2082248414|ref|XM_043063328.1| 3055 g4587 i0 83.389 78.088772845953 301 46 78 4 3 301 1221 1519 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g285250v5), mRNA blastn 29908 276 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;