RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJEB12366" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 8 ✖

bioproject 1

  • PRJEB12366 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20816 20816 PRJEB12366_P_NODE_8221_length_272_cov_1.350211_g8031_i0 PRJEB12366 8221 272 1.350211 3.67257392 Neobodo designis 312471 Euglenozoa other_Eukaryota 503 5.729999999999998e-138   NTclustered gi|1172045910|gb|KY859412.1| 312471 g8031 i0 100 96.4816176470588 272 0 100 0 1 272 477 748 Neobodo designis breed flagellate small subunit ribosomal RNA gene, partial sequence blastn 26243 503 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo designis
10223576 10223576 PRJEB12366_S_NODE_309_length_277_cov_8.421488_g301_i0 PRJEB12366 309 277 8.421488 23.32752176 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 501 2.11e-137   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g301 i0 99.281 69.4259927797834 278 1 100 1 1 277 2979 3256 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 19231 501 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
12774429 12774429 PRJEB12366_S_NODE_1571_length_194_cov_2.647799_g1563_i0 PRJEB12366 1571 194 2.647799 5.13673006 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 309 9e-80   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g1563 i0 96.757 1.94845360824742 185 6 95 0 1 185 1947 2131 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 378 309 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
14048856 14048856 PRJEB12366_P_NODE_13092_length_201_cov_0.951807_g12902_i0 PRJEB12366 13092 201 0.951807 1.91313207 Acrasis rosea 43695 Heterolobosea other_Eukaryota 176 9.94e-40   NTclustered gi|12083876|gb|AF190771.1|AF190771 43695 g12902 i0 84.066 96.2636815920398 182 29 91 0 19 200 827 1008 Acrasis rosea elongation factor 1 alpha (tef1) gene, partial cds blastn 19349 176 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis rosea
15322924 15322924 PRJEB12366_P_NODE_14133_length_191_cov_1.307692_g13943_i0 PRJEB12366 14133 191 1.307692 2.49769172 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 52.8 0.016   NTclustered gi|2031944425|emb|OD958362.1| 5763 g13943 i0 100 0.43979057591623 28 0 15 0 159 186 2497 2524 Naegleria fowleri Karachi_NF001 strain blastn 84 52.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
15322945 15322945 PRJEB12366_P_NODE_18093_length_162_cov_1.259843_g17903_i0 PRJEB12366 18093 162 1.259843 2.04094566 Neobodo designis 312471 Euglenozoa other_Eukaryota 294 2.03e-75   NTclustered gi|116222274|gb|DQ980523.1| 312471 g17903 i0 99.383 107.135802469136 162 1 100 0 1 162 424 585 Neobodo designis clone ndtub2 beta tubulin gene, partial cds blastn 17356 294 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo designis
18837459 18837459 PRJEB12366_S_NODE_375_length_260_cov_9.004444_g367_i0 PRJEB12366 375 260 9.004444 23.4115544 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 481 2.55e-131   NTclustered gi|399764157|gb|JQ271668.1| 1217110 g367 i0 100 25.9692307692308 260 0 100 0 1 260 511 252 Allovahlkampfia sp. PKD 2011a strain 4165 18S ribosomal RNA gene, partial sequence blastn 6752 481 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a
19146308 19146308 PRJEB12366_P_NODE_8176_length_273_cov_1.638655_g7986_i0 PRJEB12366 8176 273 1.638655 4.47352815 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 449 7.61e-122   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g7986 i0 96.35 3.01831501831502 274 9 100 1 1 273 3701 3974 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 824 449 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;