RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJEB12296" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJEB12296 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25500845 25500845 PRJEB12296_S_NODE_7697_length_185_cov_1.066667_g7665_i0 PRJEB12296 7697 185 1.066667 1.97333395 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 99 2e-16   NTclustered gi|290983663|ref|XM_002674502.1| 5762 g7665 i0 86.517 4.4 89 12 48 0 76 164 389 301 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_80585), mRNA blastn 814 99 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
25500876 25500876 PRJEB12296_S_NODE_9721_length_174_cov_3.000000_g9689_i0 PRJEB12296 9721 174 3 5.22 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 233 4.87e-57   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g9689 i0 90.805 1 174 16 100 0 1 174 4270 4097 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 174 233 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
25606852 25606852 PRJEB12296_S_NODE_2857_length_261_cov_7.296460_g2825_i0 PRJEB12296 2857 261 7.29646 19.0437606 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 483 7.12e-132   NTclustered gi|399764157|gb|JQ271668.1| 1217110 g2825 i0 100 27.6513409961686 261 0 100 0 1 261 514 254 Allovahlkampfia sp. PKD 2011a strain 4165 18S ribosomal RNA gene, partial sequence blastn 7217 483 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a
25636528 25636528 PRJEB12296_S_NODE_2010_length_295_cov_9.050000_g1978_i0 PRJEB12296 2010 295 9.05 26.6975 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 529 1.0399999999999996e-145   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g1978 i0 98.986 47.3898305084746 296 2 100 1 1 295 3181 2886 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 13980 529 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
25636612 25636612 PRJEB12296_S_NODE_4458_length_220_cov_3.854054_g4426_i0 PRJEB12296 4458 220 3.854054 8.4789188 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 390 3.629999999999999e-104   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g4426 i0 98.636 3.17727272727273 220 3 100 0 1 220 3526 3307 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 699 390 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
25908992 25908992 PRJEB12296_S_NODE_5636_length_203_cov_3.738095_g5604_i0 PRJEB12296 5636 203 3.738095 7.58833285 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 296 7.4e-76   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g5604 i0 94.764 2.8128078817734 191 9 94 1 14 203 3697 3887 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 571 296 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
26181146 26181146 PRJEB12296_S_NODE_2118_length_291_cov_8.003906_g2086_i0 PRJEB12296 2118 291 8.003906 23.29136646 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 483 8.069999999999998e-132   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g2086 i0 96.564 4.07903780068728 291 10 100 0 1 291 1911 2201 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1187 483 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;