RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJEB12296" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 10 ✖

tax_clade 1

bioproject 1

  • PRJEB12296 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25500855 25500855 PRJEB12296_S_NODE_8113_length_182_cov_2.102041_g8081_i0 PRJEB12296 8113 182 2.102041 3.82571462 Ripella sp. 8 1973050 Discosea other_Eukaryota 235 1.43e-57   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g8081 i0 98.496 57.3516483516484 133 2 73 0 1 133 170 38 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 10438 235 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
25606819 25606819 PRJEB12296_S_NODE_1609_length_317_cov_9.170213_g1577_i0 PRJEB12296 1609 317 9.170213 29.06957521 Vermistella 354201 Discosea other_Eukaryota 100 1.05e-16   NTclustered gi|766943132|gb|KJ874207.1| 1628650 g1577 i0 90.667 25.9116719242902 75 7 24 0 1 75 1596 1522 Vermistella sp. TT-2015a strain SV198 clone 1 18S ribosomal RNA gene, partial sequence blastn 8214 100 1 Eukaryota Amoebozoa   Discosea   Stygamoebida   Vermistella Vermistella arctica
25636587 25636587 PRJEB12296_S_NODE_3834_length_233_cov_2.348485_g3802_i0 PRJEB12296 3834 233 2.348485 5.47197005 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 383 6.51e-102   NTclustered gi|330902855|gb|JF298253.1| 1017091 g3802 i0 99.524 60.725321888412 210 1 90 0 1 210 643 434 Cochliopodium larifeili clone 901 18S ribosomal RNA gene, partial sequence blastn 14149 383 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
25772744 25772744 PRJEB12296_S_NODE_2763_length_264_cov_278.336245_g2731_i0 PRJEB12296 2763 264 278.336245 734.8076868 Thecamoeba similis 242545 Discosea other_Eukaryota 243 1.33e-59   NTclustered gi|33946350|gb|AY294154.1| 242545 g2731 i0 89.286 72.5909090909091 196 18 73 3 40 233 972 1166 Thecamoeba similis actin mRNA, complete cds blastn 19164 243 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba similis
25908905 25908905 PRJEB12296_S_NODE_2500_length_274_cov_1.820084_g2468_i0 PRJEB12296 2500 274 1.820084 4.98703016 Vannella septentrionalis 197531 Discosea other_Eukaryota 466 7.58e-127   NTclustered gi|300078499|gb|GU001161.1| 197531 g2468 i0 98.485 35.985401459854 264 4 96 0 1 264 871 1134 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9860 466 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
26181257 26181257 PRJEB12296_S_NODE_5582_length_204_cov_1.360947_g5550_i0 PRJEB12296 5582 204 1.360947 2.77633188 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 294 2.68e-75   NTclustered gi|330902855|gb|JF298253.1| 1017091 g5550 i0 92.683 12.6617647058824 205 14 100 1 1 204 654 858 Cochliopodium larifeili clone 901 18S ribosomal RNA gene, partial sequence blastn 2583 294 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
26317022 26317022 PRJEB12296_S_NODE_7231_length_188_cov_4.522876_g7199_i0 PRJEB12296 7231 188 4.522876 8.50300688 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 99 2.04e-16   NTclustered gi|300078498|gb|GU001160.1| 5755 g7199 i0 87.356 1.61702127659574 87 10 46 1 103 188 6888 6802 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 304 99 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
26453071 26453071 PRJEB12296_S_NODE_11208_length_168_cov_5.736842_g11176_i0 PRJEB12296 11208 168 5.736842 9.63789456 Protacanthamoeba bohemica 325062 Discosea other_Eukaryota 198 1.7099999999999997e-46   NTclustered gi|2806326584|gb|PQ345834.1| 325062 g11176 i0 90.604 36.1488095238095 149 14 89 0 3 151 143 291 Protacanthamoeba bohemica isolate 6FSb1 small subunit ribosomal RNA gene, partial sequence blastn 6073 198 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Protacanthamoeba Protacanthamoeba bohemica
26453106 26453106 PRJEB12296_S_NODE_1440_length_328_cov_8.696246_g1408_i0 PRJEB12296 1440 328 8.696246 28.52368688 Protacanthamoeba bohemica 325062 Discosea other_Eukaryota 446 1.21e-120   NTclustered gi|62825358|gb|AY960120.1| 325062 g1408 i0 91.541 79.015243902439 331 16 100 7 1 328 1118 797 Protacanthamoeba bohemica small subunit ribosomal RNA gene, complete sequence blastn 25917 446 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Protacanthamoeba Protacanthamoeba bohemica
26453233 26453233 PRJEB12296_S_NODE_4136_length_226_cov_3.722513_g4104_i0 PRJEB12296 4136 226 3.722513 8.41287938 Protacanthamoeba bohemica 325062 Discosea other_Eukaryota 272 1.42e-68   NTclustered gi|2806326584|gb|PQ345834.1| 325062 g4104 i0 91.584 65.8230088495575 202 10 88 6 13 211 276 473 Protacanthamoeba bohemica isolate 6FSb1 small subunit ribosomal RNA gene, partial sequence blastn 14876 272 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Protacanthamoeba Protacanthamoeba bohemica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;