RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB12237" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB12237 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20659 20659 PRJEB12237_P_NODE_11741_length_153_cov_1.355932_g11545_i0 PRJEB12237 11741 153 1.355932 2.07457596 Diplogasteroides magnus 560213 Nematoda Nematoda 106 9.49e-19   NTclustered gi|256709249|gb|GQ422277.1| 560213 g11545 i0 84.906 7.64705882352941 106 14 69 2 46 150 45 149 Diplogasteroides magnus small subunit ribosomal protein 14 (rps-14) mRNA, partial cds blastn 1170 106 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteroididae Diplogasteroides Diplogasteroides magnus
22972672 22972672 PRJEB12237_P_NODE_5079_length_272_cov_1.468354_g4883_i0 PRJEB12237 5079 272 1.468354 3.99392288 Terschellingia longicaudata 319962 Nematoda Nematoda 117 8.73e-22   NTclustered gi|1172206953|emb|LT703373.1| 319962 g4883 i0 80.625 58.7573529411765 160 22 58 7 113 271 696 847 Terschellingia longicaudata partial 18S rRNA gene, isolate 1620_Amon_V blastn 15982 117 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Monhysterida Linhomoeidae Terschellingia Terschellingia longicaudata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;