RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB12237" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB12237 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9913785 9913785 PRJEB12237_P_NODE_8628_length_186_cov_1.059603_g8432_i0 PRJEB12237 8628 186 1.059603 1.97086158 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 176 9.04e-40   NTclustered gi|2835350387|ref|XM_069247481.1| 31199 g8432 i0 91.406 67.1290322580645 128 11 69 0 1 128 1215 1342 PREDICTED: Argopecten irradians tubulin beta chain-like (LOC138306912), transcript variant X5, mRNA blastn 12486 176 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Argopecten Argopecten irradians
13739053 13739053 PRJEB12237_P_NODE_8891_length_182_cov_1.605442_g8695_i0 PRJEB12237 8891 182 1.605442 2.92190444 Mollusca 6447 Mollusca Mollusca 84.2 5.49e-12   NTclustered gi|1897935532|ref|XR_220835.3| 6500 g8695 i0 96.078 8.17032967032967 51 2 28 0 132 182 1639 1589 PREDICTED: Aplysia californica tubulin beta-4B chain-like (LOC101860763), misc_RNA blastn 1487 84.2 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Aplysiida Aplysiidae Aplysia Aplysia californica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;