RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJEB12237" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Discosea · 8 ✖

tax_clade 1

bioproject 1

  • PRJEB12237 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20722 20722 PRJEB12237_P_NODE_921_length_765_cov_5.484932_g774_i0 PRJEB12237 921 765 5.484932 41.9597298 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 344 1.13e-89   NTclustered gi|470441552|ref|XM_004339378.1| 1257118 g774 i0 79.31 60.4901960784314 522 85 67 18 49 559 13 522 Acanthamoeba castellanii str. Neff ribosomal protein L10, putative (ACA1_061530), partial mRNA blastn 46275 344 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6398789 6398789 PRJEB12237_P_NODE_1186_length_668_cov_4.592417_g1025_i0 PRJEB12237 1186 668 4.592417 30.67734556 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 311 9.94e-80   NTclustered gi|470441658|ref|XM_004339391.1| 1257118 g1025 i0 78.571 58.312874251497 490 92 73 12 128 612 540 59 Acanthamoeba castellanii str. Neff ribosomal L5P family Cterminus, putative (ACA1_061660), partial mRNA blastn 38953 311 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7672870 7672870 PRJEB12237_P_NODE_1647_length_564_cov_1.933837_g1467_i0 PRJEB12237 1647 564 1.933837 10.90684068 Vannella septentrionalis 197531 Discosea other_Eukaryota 167 1.9e-36   NTclustered gi|300078499|gb|GU001161.1| 197531 g1467 i0 81.517 21.1418439716312 211 32 37 5 201 408 2295 2089 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11924 167 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
11498716 11498716 PRJEB12237_P_NODE_5550_length_253_cov_2.357798_g5354_i0 PRJEB12237 5550 253 2.357798 5.96522894 Vannella sp. LITHOV 1215650 Discosea other_Eukaryota 435 1.95e-117   NTclustered gi|399764235|gb|JQ271746.1| 1215650 g5354 i0 97.638 97.296442687747 254 4 100 2 1 253 441 189 Vannella sp. LITHOV 18S ribosomal RNA gene, partial sequence blastn 24616 435 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. LITHOV
14048770 14048770 PRJEB12237_P_NODE_10412_length_164_cov_1.550388_g10216_i0 PRJEB12237 10412 164 1.550388 2.54263632 Vannella septentrionalis 197531 Discosea other_Eukaryota 281 1.6000000000000001e-71   NTclustered gi|300078499|gb|GU001161.1| 197531 g10216 i0 97.561 92.0670731707317 164 4 100 0 1 164 4029 4192 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15099 281 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
14048786 14048786 PRJEB12237_P_NODE_152_length_1587_cov_7.943299_g107_i0 PRJEB12237 152 1587 7.943299 126.06015513 Ripella sp. 805 1217113 Discosea other_Eukaryota 859 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g107 i0 94.803 31.3503465658475 558 18 35 10 2 556 550 1 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 49753 859 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
15322878 15322878 PRJEB12237_P_NODE_6733_length_220_cov_1.756757_g6537_i0 PRJEB12237 6733 220 1.756757 3.8648654 Vannella sp. BEN3V 1215631 Discosea other_Eukaryota 335 1.7299999999999996e-87   NTclustered gi|399764216|gb|JQ271727.1| 1215631 g6537 i0 94.545 75.0545454545454 220 7 100 5 1 220 662 876 Vannella sp. BEN3V 18S ribosomal RNA gene, partial sequence blastn 16512 335 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. BEN3V
22972655 22972655 PRJEB12237_P_NODE_2439_length_451_cov_2.009615_g2243_i0 PRJEB12237 2439 451 2.009615 9.06336365 Ripella decalvata 2047822 Discosea other_Eukaryota 737 0   NTclustered gi|1269228431|gb|MF683556.1| 2047822 g2243 i0 96.637 99.310421286031 446 12 99 2 7 451 1572 1129 Ripella decalvata clone 26.2.11 18S ribosomal RNA gene, partial sequence blastn 44789 737 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;