RNAquarium Metadata Server
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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJEB12237" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 12 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB12237 · 12 ✖

analysis 1

  • blastn · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
985621 985621 PRJEB12237_P_NODE_5981_length_240_cov_1.058537_g5785_i0 PRJEB12237 5981 240 1.058537 2.5404888 Opisthokonta 33154 Chordata Chordata 183 7.339999999999998e-42   NTclustered gi|1993818877|ref|XM_039710182.1| 9160 g5785 i0 82.464 73.0791666666667 211 35 88 2 31 240 54 263 PREDICTED: Passer montanus ribosomal protein S27 (RPS27), mRNA blastn 17539 183 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Passeridae Passer Passer montanus
2570557 2570557 PRJEB12237_P_NODE_12123_length_150_cov_1.713043_g11927_i0 PRJEB12237 12123 150 1.713043 2.5695645 Dendropsophus ebraccatus 150705 Chordata Chordata 119 1.19e-22   NTclustered gi|2853427030|ref|XM_069969084.1| 150705 g11927 i0 83.465 6.11333333333333 127 21 85 0 5 131 238 112 PREDICTED: Dendropsophus ebraccatus ribosomal protein L5 (RPL5), mRNA blastn 917 119 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Dendropsophus Dendropsophus ebraccatus
3846868 3846868 PRJEB12237_P_NODE_10584_length_163_cov_1.242188_g10388_i0 PRJEB12237 10584 163 1.242188 2.02476644 Lethenteron reissneri 7753 Chordata Chordata 52.8 0.014   NTclustered gi|2635816354|ref|XM_061550258.1| 7753 g10388 i0 100 0.171779141104294 28 0 17 0 128 155 4806 4779 PREDICTED: Lethenteron reissneri pappalysin-1-like (LOC133341666), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lethenteron Lethenteron reissneri
4813441 4813441 PRJEB12237_P_NODE_2764_length_418_cov_7.104439_g2568_i0 PRJEB12237 2764 418 7.104439 29.69655502 Petromyzontidae 7746 Chordata Chordata 75 8.58e-9   NTclustered gi|2814976564|emb|OZ078569.2| 7748 g2568 i0 95.652 0.770334928229665 46 2 11 0 373 418 1740321 1740276 Lampetra fluviatilis genome assembly, chromosome: 1 blastn 322 75 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
9913745 9913745 PRJEB12237_P_NODE_2748_length_419_cov_5.648438_g2552_i0 PRJEB12237 2748 419 5.648438 23.66695522 Petromyzontidae 7746 Chordata Chordata 75 8.61e-9   NTclustered gi|2814976564|emb|OZ078569.2| 7748 g2552 i0 95.652 0.902147971360382 46 2 11 0 374 419 1740321 1740276 Lampetra fluviatilis genome assembly, chromosome: 1 blastn 378 75 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
14048831 14048831 PRJEB12237_P_NODE_7032_length_214_cov_1.268156_g6836_i0 PRJEB12237 7032 214 1.268156 2.71385384 Gekko japonicus 146911 Chordata Chordata 52.8 0.019   NTclustered gi|975110117|ref|XM_015415122.1| 146911 g6836 i0 100 0.130841121495327 28 0 13 0 14 41 1434 1407 PREDICTED: Gekko japonicus elastin microfibril interfacer 1 (EMILIN1), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Gekkonidae Gekko Gekko japonicus
15322877 15322877 PRJEB12237_P_NODE_6513_length_225_cov_2.884211_g6317_i0 PRJEB12237 6513 225 2.884211 6.48947475 Gallus gallus 9031 Chordata Chordata 405 1.33e-108   NTclustered gi|2024360918|ref|XR_005840280.1| 9031 g6317 i0 99.111 86.8888888888889 225 2 100 0 1 225 2790 3014 PREDICTED: Gallus gallus 28S ribosomal RNA (LOC121107017), rRNA blastn 19550 405 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
15322889 15322889 PRJEB12237_P_NODE_9153_length_179_cov_1.076389_g8957_i0 PRJEB12237 9153 179 1.076389 1.92673631 Pithys albifrons 265642 Chordata Chordata 91.6 3.21e-14   NTclustered gi|2917189517|ref|XM_071551945.1| 3385563 g8957 i0 96.364 2.08379888268156 55 2 31 0 3 57 597 651 PREDICTED: Pithys albifrons albifrons histone H3 (LOC139670352), mRNA blastn 373 91.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Thamnophilidae Pithys Pithys albifrons
18837392 18837392 PRJEB12237_P_NODE_11895_length_152_cov_1.367521_g11699_i0 PRJEB12237 11895 152 1.367521 2.07863192 Mammalia 40674 Chordata Chordata 58.4 2.67e-4   NTclustered gi|1561905959|ref|XM_027874765.1| 29139 g11699 i0 100 3.47368421052632 31 0 20 0 54 84 5492 5522 PREDICTED: Vombatus ursinus trinucleotide repeat containing 18 (TNRC18), transcript variant X3, mRNA blastn 528 58.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Diprotodontia Vombatidae Vombatus Vombatus ursinus
20421326 20421326 PRJEB12237_P_NODE_1637_length_566_cov_1.924670_g1457_i0 PRJEB12237 1637 566 1.92467 10.8936322 Spinus spinus 160760 Chordata Chordata 54.7 0.016   NTclustered gi|2917672833|emb|OZ228771.1| 160760 g1457 i0 100 0.153710247349823 29 0 5 0 143 171 2309169 2309197 Spinus spinus genome assembly, chromosome: 22 blastn 87 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Spinus Spinus spinus
24246502 24246502 PRJEB12237_P_NODE_6180_length_234_cov_3.015075_g5984_i0 PRJEB12237 6180 234 3.015075 7.0552755 Mus musculus 10090 Chordata Chordata 287 5.28e-73   NTclustered gi|62185774|gb|BC092277.1| 10090 g5984 i0 98.171 28.7051282051282 164 3 70 0 71 234 3186 3349 Mus musculus epidermal growth factor, mRNA (cDNA clone MGC:102520 IMAGE:4240429), complete cds blastn 6717 287 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
25211700 25211700 PRJEB12237_P_NODE_8820_length_183_cov_1.351351_g8624_i0 PRJEB12237 8820 183 1.351351 2.47297233 Anas 8835 Chordata Chordata 52.8 0.016   NTclustered gi|1944759296|ref|XM_027452385.2| 8839 g8624 i0 100 0.306010928961749 28 0 15 0 31 58 54 81 PREDICTED: Anas platyrhynchos hes related family bHLH transcription factor with YRPW motif 1 (HEY1), mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anas Anas platyrhynchos

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;