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contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJEB12237" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 15 ✖

bioproject 1

  • PRJEB12237 · 15 ✖

analysis 1

  • blastn · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1294943 1294943 PRJEB12237_P_NODE_9942_length_169_cov_1.492537_g9746_i0 PRJEB12237 9942 169 1.492537 2.52238753 Auxenochlorella protothecoides 3075 Plants Plants 126 8.2e-25   NTclustered gi|760448344|ref|XM_011402939.1| 3075 g9746 i0 85.714 49.6213017751479 119 17 70 0 44 162 119 1 Auxenochlorella protothecoides 60S ribosomal protein L15 partial mRNA blastn 8386 126 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
2570565 2570565 PRJEB12237_P_NODE_2083_length_494_cov_7.385621_g1895_i0 PRJEB12237 2083 494 7.385621 36.48496774 Chlamydomonas reinhardtii 3055 Plants Plants 106 3.65e-18   NTclustered gi|2082260798|ref|XM_001697008.2| 3055 g1895 i0 92 1.12348178137652 75 6 15 0 281 355 957 1031 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_12g520500v5), mRNA blastn 555 106 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
3846908 3846908 PRJEB12237_P_NODE_5024_length_274_cov_2.025105_g4828_i0 PRJEB12237 5024 274 2.025105 5.5487877 Coccomyxa subellipsoidea 248742 Plants Plants 496 9.67e-136   NTclustered gi|1360638125|gb|AC277041.1| 574566 g4828 i0 99.27 16.6532846715328 274 2 100 0 1 274 39822 39549 Coccomyxa subellipsoidea C-169 clone FAHX05-A01, complete sequence blastn 4563 496 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
5123107 5123107 PRJEB12237_P_NODE_9665_length_172_cov_1.781022_g9469_i0 PRJEB12237 9665 172 1.781022 3.06335784 Coccomyxa subellipsoidea 248742 Plants Plants 318 1.2899999999999999e-82   NTclustered gi|1360638129|gb|AC277064.1| 574566 g9469 i0 100 99.5116279069767 172 0 100 0 1 172 2595 2766 Coccomyxa subellipsoidea C-169 clone FAHX137-B20, complete sequence blastn 17116 318 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
7363271 7363271 PRJEB12237_P_NODE_1146_length_680_cov_4.031008_g987_i0 PRJEB12237 1146 680 4.031008 27.4108544 Eukaryota 2759 Plants Plants 324 1.3e-83   NTclustered gi|552825417|ref|XM_005846759.1| 554065 g987 i0 81.818 29.7205882352941 385 70 57 0 132 516 13 397 Chlorella variabilis 40S ribosomal protein S14 (CHLNCDRAFT_135401) mRNA, complete cds blastn 20210 327 0.990825688073395 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
7672893 7672893 PRJEB12237_P_NODE_4407_length_303_cov_1.791045_g4211_i0 PRJEB12237 4407 303 1.791045 5.42686635 Polytomella sp. Pringsheim 198.80 37502 Plants Plants 134 9.8e-27   NTclustered gi|402244316|emb|FR686759.1| 37502 g4211 i0 80.702 0.564356435643564 171 33 56 0 2 172 989 1159 Polytomella sp. Pringsheim 198.80 mRNA for 40S ribosomal protein L3 (rpl3 gene) blastn 171 134 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella sp. Pringsheim 198.80
7672906 7672906 PRJEB12237_P_NODE_6487_length_226_cov_1.675393_g6291_i0 PRJEB12237 6487 226 1.675393 3.78638818 Coccomyxa subellipsoidea 248742 Plants Plants 405 1.34e-108   NTclustered gi|1360638129|gb|AC277064.1| 574566 g6291 i0 99.111 99.4159292035398 225 2 99 0 1 225 1715 1491 Coccomyxa subellipsoidea C-169 clone FAHX137-B20, complete sequence blastn 22468 405 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
8947654 8947654 PRJEB12237_P_NODE_1768_length_541_cov_1.818182_g1585_i0 PRJEB12237 1768 541 1.818182 9.83636462 Polytomella sp. Pringsheim 198.80 37502 Plants Plants 307 1.03e-78   NTclustered gi|635557420|emb|FN984965.1| 37502 g1585 i0 79.545 32.9611829944547 440 82 81 8 50 485 1019 1454 Polytomella sp. Pringsheim 198.80 mRNA for S-Adenosyl homocysteine hydrolase (sah1 gene) blastn 17832 307 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella sp. Pringsheim 198.80
8947655 8947655 PRJEB12237_P_NODE_2108_length_490_cov_3.015385_g1920_i0 PRJEB12237 2108 490 3.015385 14.7753865 Monoraphidium neglectum 145388 Plants Plants 231 5.719999999999999e-56   NTclustered gi|926795717|ref|XM_014050538.1| 145388 g1920 i0 80.192 31.7387755102041 313 58 63 4 109 419 365 55 Monoraphidium neglectum 40S ribosomal protein S20-1 mRNA blastn 15552 231 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
10223403 10223403 PRJEB12237_P_NODE_10809_length_161_cov_1.166667_g10613_i0 PRJEB12237 10809 161 1.166667 1.87833387 Pedinomonas sp. M2079/1 1108796 Plants Plants 165 1.65e-36   NTclustered gi|371782103|emb|HE610135.1| 1108796 g10613 i0 85.897 4.47204968944099 156 20 96 2 1 155 4008 4162 Pedinomonas sp. M2079/1 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain M2079/1 blastn 720 165 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae Pedinomonadales Pedinomonadaceae Pedinomonas Pedinomonas sp. M2079/1
10223434 10223434 PRJEB12237_P_NODE_2929_length_403_cov_2.880435_g2733_i0 PRJEB12237 2929 403 2.880435 11.60815305 Chlamydomonas reinhardtii 3055 Plants Plants 141 8.02e-29   NTclustered gi|2082244743|ref|XM_001698671.2| 3055 g2733 i0 79.397 1.84863523573201 199 41 49 0 1 199 556 754 Chlamydomonas reinhardtii ribosomal protein L23 (CHLRE_04g211800v5), mRNA blastn 745 141 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
12464755 12464755 PRJEB12237_P_NODE_8350_length_189_cov_3.623377_g8154_i0 PRJEB12237 8350 189 3.623377 6.84818253 Coccomyxa 41891 Plants Plants 350 5.14e-92   NTclustered gi|2916178960|gb|PV156797.1| 248742 g8154 i0 100 99.984126984127 189 0 100 0 1 189 862 674 Coccomyxa subellipsoidea small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 18897 350 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
17563479 17563479 PRJEB12237_P_NODE_9134_length_179_cov_1.111111_g8938_i0 PRJEB12237 9134 179 1.111111 1.98888869 Chlorophyta 3041 Plants Plants 158 3.12e-34   NTclustered gi|2082236323|ref|XM_001689445.2| 3055 g8938 i0 85.897 14.4692737430168 156 13 87 6 13 168 656 802 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g019250v5), mRNA blastn 2590 159 0.993710691823899 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
20112168 20112168 PRJEB12237_P_NODE_3436_length_359_cov_1.413580_g3240_i0 PRJEB12237 3436 359 1.41358 5.0747522 Eukaryota 2759 Plants Plants 111 5.53e-20   NTclustered gi|760450068|ref|XM_011403801.1| 3075 g3240 i0 90.476 24.1281337047354 84 8 23 0 276 359 404 321 Auxenochlorella protothecoides Peptidyl-prolyl cis-trans isomerase CYP18-4 partial mRNA blastn 8662 111 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
22972688 22972688 PRJEB12237_P_NODE_8059_length_194_cov_2.012579_g7863_i0 PRJEB12237 8059 194 2.012579 3.90440326 Monoraphidium neglectum 145388 Plants Plants 159 9.589999999999999e-35   NTclustered gi|926781159|ref|XM_014043600.1| 145388 g7863 i0 86.806 24.5154639175258 144 17 74 2 3 145 2660 2802 Monoraphidium neglectum hypothetical protein mRNA blastn 4756 159 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;