contig_metadata
11 rows where analysis = "blastn", bioproject = "PRJEB12237" and tax_clade = "PVC group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3846936 | 3846936 | PRJEB12237_P_NODE_9564_length_173_cov_2.384058_g9368_i0 | PRJEB12237 | 9564 | 173 | 2.384058 | 4.12442034 | Lacipirellula parvula | 2650471 | Bacteria | Bacteria | 292 | 7.87e-75 | NTclustered | gi|1761017769|dbj|AP021861.1| | 2650471 | g9368 | i0 | 97.11 | 310.387283236994 | 173 | 5 | 100 | 0 | 1 | 173 | 5164135 | 5163963 | Lacipirellula parvula PX69 DNA, complete genome | blastn | 53697 | 292 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Pirellulales | Lacipirellulaceae | Lacipirellula | Lacipirellula parvula | |
| 5123106 | 5123106 | PRJEB12237_P_NODE_9185_length_178_cov_1.853147_g8989_i0 | PRJEB12237 | 9185 | 178 | 1.853147 | 3.29860166 | Lacipirellula limnantheis | 2528024 | Bacteria | Bacteria | 318 | 1.34e-82 | NTclustered | gi|1712529062|gb|CP036339.1| | 2528024 | g8989 | i0 | 98.876 | 7.2752808988764 | 178 | 2 | 100 | 0 | 1 | 178 | 5171560 | 5171737 | Lacipirellula limnantheis strain I41 chromosome | blastn | 1295 | 318 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Pirellulales | Lacipirellulaceae | Lacipirellula | Lacipirellula limnantheis | |
| 11498706 | 11498706 | PRJEB12237_P_NODE_3910_length_328_cov_1.740614_g3714_i0 | PRJEB12237 | 3910 | 328 | 1.740614 | 5.70921392 | Aquisphaera giovannonii | 406548 | Bacteria | Bacteria | 388 | 2.07e-103 | NTclustered | gi|1730068067|gb|CP042997.1| | 406548 | g3714 | i0 | 89.644 | 126.359756097561 | 309 | 26 | 97 | 4 | 1 | 305 | 5179354 | 5179660 | Aquisphaera giovannonii strain OJF2 chromosome, complete genome | blastn | 41446 | 388 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Isosphaerales | Isosphaeraceae | Aquisphaera | Aquisphaera giovannonii | |
| 11498728 | 11498728 | PRJEB12237_P_NODE_6890_length_217_cov_1.335165_g6694_i0 | PRJEB12237 | 6890 | 217 | 1.335165 | 2.89730805 | Pirellulimonas nuda | 2528009 | Bacteria | Bacteria | 235 | 1.77e-57 | NTclustered | gi|1712662089|gb|CP036291.1| | 2528009 | g6694 | i0 | 86.175 | 99.7880184331797 | 217 | 30 | 100 | 0 | 1 | 217 | 1067460 | 1067676 | Pirellulimonas nuda strain Pla175 chromosome, complete genome | blastn | 21654 | 235 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Pirellulales | Lacipirellulaceae | Pirellulimonas | Pirellulimonas nuda | |
| 14048839 | 14048839 | PRJEB12237_P_NODE_8352_length_189_cov_3.012987_g8156_i0 | PRJEB12237 | 8352 | 189 | 3.012987 | 5.69454543 | Lacipirellula parvula | 2650471 | Bacteria | Bacteria | 350 | 5.14e-92 | NTclustered | gi|1761017769|dbj|AP021861.1| | 2650471 | g8156 | i0 | 100 | 358.349206349206 | 189 | 0 | 100 | 0 | 1 | 189 | 5163124 | 5163312 | Lacipirellula parvula PX69 DNA, complete genome | blastn | 67728 | 350 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Pirellulales | Lacipirellulaceae | Lacipirellula | Lacipirellula parvula | |
| 16597464 | 16597464 | PRJEB12237_P_NODE_1274_length_642_cov_3.705107_g1109_i0 | PRJEB12237 | 1274 | 642 | 3.705107 | 23.78678694 | uncultured Gemmataceae bacterium | 1914239 | Bacteria | Bacteria | 665 | 0 | NTclustered | gi|2874253853|emb|OY969909.1| | 1914239 | g1109 | i0 | 85.496 | 194.007788161994 | 655 | 76 | 99 | 16 | 2 | 642 | 2002300 | 2001651 | MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 | blastn | 124553 | 665 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | uncultured Gemmataceae bacterium | ||
| 19146175 | 19146175 | PRJEB12237_P_NODE_4596_length_292_cov_3.428016_g4400_i0 | PRJEB12237 | 4596 | 292 | 3.428016 | 10.00980672 | Gemmataceae bacterium | 2052164 | Bacteria | Bacteria | 405 | 1.7999999999999997e-108 | NTclustered | gi|2063814025|emb|LR586051.1| | 2052164 | g4400 | i0 | 91.781 | 81.9760273972603 | 292 | 23 | 100 | 1 | 1 | 292 | 318057 | 317767 | Gemmata bacterium CJuql4 whole genome assembly and annotation | blastn | 23937 | 405 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | Gemmataceae bacterium | ||
| 21697417 | 21697417 | PRJEB12237_P_NODE_6438_length_227_cov_2.098958_g6242_i0 | PRJEB12237 | 6438 | 227 | 2.098958 | 4.76463466 | Stratiformator vulcanicus | 2527980 | Bacteria | Bacteria | 231 | 2.4199999999999997e-56 | NTclustered | gi|1712491480|gb|CP036268.1| | 2527980 | g6242 | i0 | 87.94 | 48.784140969163 | 199 | 20 | 87 | 3 | 28 | 225 | 3083081 | 3082886 | Stratiformator vulcanicus strain Pan189 chromosome | blastn | 11074 | 231 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Planctomycetales | Planctomycetaceae | Stratiformator | Stratiformator vulcanicus | |
| 22662544 | 22662544 | PRJEB12237_P_NODE_5158_length_268_cov_6.291845_g4962_i0 | PRJEB12237 | 5158 | 268 | 6.291845 | 16.8621446 | Lacipirellula | 2691417 | Bacteria | Bacteria | 448 | 2.6799999999999997e-121 | NTclustered | gi|1712529062|gb|CP036339.1| | 2528024 | g4962 | i0 | 96.992 | 168.80223880597 | 266 | 8 | 99 | 0 | 3 | 268 | 5169115 | 5169380 | Lacipirellula limnantheis strain I41 chromosome | blastn | 45239 | 448 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Pirellulales | Lacipirellulaceae | Lacipirellula | Lacipirellula limnantheis | |
| 22662560 | 22662560 | PRJEB12237_P_NODE_6998_length_214_cov_5.262570_g6802_i0 | PRJEB12237 | 6998 | 214 | 5.26257 | 11.2618998 | Gemmata | 113 | Bacteria | Bacteria | 305 | 1.31e-78 | NTclustered | gi|12583965|gb|AF245369.1|AF245369 | 114 | g6802 | i0 | 92.488 | 49.3878504672897 | 213 | 16 | 99 | 0 | 2 | 214 | 2241 | 2029 | Gemmata obscuriglobus 23S ribosomal RNA gene, partial sequence | blastn | 10569 | 305 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | Gemmata | Gemmata obscuriglobus | |
| 25211642 | 25211642 | PRJEB12237_P_NODE_10200_length_166_cov_2.129771_g10004_i0 | PRJEB12237 | 10200 | 166 | 2.129771 | 3.53541986 | Candidatus Protochlamydia | 282132 | Bacteria | Bacteria | 307 | 2.69e-79 | NTclustered | gi|1691252667|emb|BX908798.2| | 264201 | g10004 | i0 | 100 | 80.9879518072289 | 166 | 0 | 100 | 0 | 1 | 166 | 1250601 | 1250436 | Candidatus Protochlamydia amoebophila UWE25 complete genome | blastn | 13444 | 307 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Candidatus Protochlamydia | Candidatus Protochlamydia amoebophila |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;