RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJEB12237" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_clade 1

  • Haptista · 1 ✖

bioproject 1

  • PRJEB12237 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14048795 14048795 PRJEB12237_P_NODE_2352_length_461_cov_3.708920_g2156_i0 PRJEB12237 2352 461 3.70892 17.0981212 Raphidocystis contractilis 2792838 Root_unresolved Root_unresolved 300 1.45e-76   NTclustered gi|259475615|emb|FN392423.1| 2792838 g2156 i0 83.851 67.9110629067245 322 44 69 7 128 445 454 137 Raphidiophrys contractilis partial mRNA for 40S ribosomal protein S23, contig D2-M13 blastn 31307 300 1 Eukaryota Haptista     Centroplasthelida Acanthocystida Raphidocystidae Raphidocystis Raphidocystis contractilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;