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contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJEB12237" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 14 ✖

bioproject 1

  • PRJEB12237 · 14 ✖

analysis 1

  • blastn · 14 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20722 20722 PRJEB12237_P_NODE_921_length_765_cov_5.484932_g774_i0 PRJEB12237 921 765 5.484932 41.9597298 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 344 1.13e-89   NTclustered gi|470441552|ref|XM_004339378.1| 1257118 g774 i0 79.31 60.4901960784314 522 85 67 18 49 559 13 522 Acanthamoeba castellanii str. Neff ribosomal protein L10, putative (ACA1_061530), partial mRNA blastn 46275 344 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
1294924 1294924 PRJEB12237_P_NODE_6902_length_216_cov_23.005525_g6706_i0 PRJEB12237 6902 216 23.005525 49.691934 Filamoeba nolandi 136452 Evosea other_Eukaryota 394 2.75e-105   NTclustered gi|57546814|gb|AY714368.1| 136452 g6706 i0 99.537 101.333333333333 216 1 100 0 1 216 1690 1475 Filamoeba nolandi strain CCAP1526 small subunit ribosomal RNA gene, complete sequence blastn 21888 394 1 Eukaryota Amoebozoa   Evosea Variosea     Filamoeba Filamoeba nolandi
6398789 6398789 PRJEB12237_P_NODE_1186_length_668_cov_4.592417_g1025_i0 PRJEB12237 1186 668 4.592417 30.67734556 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 311 9.94e-80   NTclustered gi|470441658|ref|XM_004339391.1| 1257118 g1025 i0 78.571 58.312874251497 490 92 73 12 128 612 540 59 Acanthamoeba castellanii str. Neff ribosomal L5P family Cterminus, putative (ACA1_061660), partial mRNA blastn 38953 311 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7672870 7672870 PRJEB12237_P_NODE_1647_length_564_cov_1.933837_g1467_i0 PRJEB12237 1647 564 1.933837 10.90684068 Vannella septentrionalis 197531 Discosea other_Eukaryota 167 1.9e-36   NTclustered gi|300078499|gb|GU001161.1| 197531 g1467 i0 81.517 21.1418439716312 211 32 37 5 201 408 2295 2089 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11924 167 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
8947668 8947668 PRJEB12237_P_NODE_3788_length_336_cov_1.571429_g3592_i0 PRJEB12237 3788 336 1.571429 5.28000144 Acytostelium subglobosum 361139 Evosea other_Eukaryota 137 8.51e-28   NTclustered gi|831753332|ref|XM_012892328.1| 1410327 g3592 i0 79.703 1.37202380952381 202 31 59 7 136 332 571 767 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 461 137 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
11498716 11498716 PRJEB12237_P_NODE_5550_length_253_cov_2.357798_g5354_i0 PRJEB12237 5550 253 2.357798 5.96522894 Vannella sp. LITHOV 1215650 Discosea other_Eukaryota 435 1.95e-117   NTclustered gi|399764235|gb|JQ271746.1| 1215650 g5354 i0 97.638 97.296442687747 254 4 100 2 1 253 441 189 Vannella sp. LITHOV 18S ribosomal RNA gene, partial sequence blastn 24616 435 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. LITHOV
11498719 11498719 PRJEB12237_P_NODE_6130_length_236_cov_1.099502_g5934_i0 PRJEB12237 6130 236 1.099502 2.59482472 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.021   NTclustered gi|111226891|ref|XM_639539.2| 352472 g5934 i0 100 0.23728813559322 28 0 12 0 36 63 2100 2073 Dictyostelium discoideum AX4 adaptor-related protein complex 2, alpha subunit (ap2a1-2) mRNA, complete cds blastn 56 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
14048770 14048770 PRJEB12237_P_NODE_10412_length_164_cov_1.550388_g10216_i0 PRJEB12237 10412 164 1.550388 2.54263632 Vannella septentrionalis 197531 Discosea other_Eukaryota 281 1.6000000000000001e-71   NTclustered gi|300078499|gb|GU001161.1| 197531 g10216 i0 97.561 92.0670731707317 164 4 100 0 1 164 4029 4192 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15099 281 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
14048786 14048786 PRJEB12237_P_NODE_152_length_1587_cov_7.943299_g107_i0 PRJEB12237 152 1587 7.943299 126.06015513 Ripella sp. 805 1217113 Discosea other_Eukaryota 859 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g107 i0 94.803 31.3503465658475 558 18 35 10 2 556 550 1 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 49753 859 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
15322878 15322878 PRJEB12237_P_NODE_6733_length_220_cov_1.756757_g6537_i0 PRJEB12237 6733 220 1.756757 3.8648654 Vannella sp. BEN3V 1215631 Discosea other_Eukaryota 335 1.7299999999999996e-87   NTclustered gi|399764216|gb|JQ271727.1| 1215631 g6537 i0 94.545 75.0545454545454 220 7 100 5 1 220 662 876 Vannella sp. BEN3V 18S ribosomal RNA gene, partial sequence blastn 16512 335 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. BEN3V
16597489 16597489 PRJEB12237_P_NODE_3714_length_339_cov_20.973684_g3518_i0 PRJEB12237 3714 339 20.973684 71.10078876 Filamoeba nolandi 136452 Evosea other_Eukaryota 532 9.38e-147   NTclustered gi|57546814|gb|AY714368.1| 136452 g3518 i0 95.536 59.4247787610619 336 10 98 5 7 339 1524 1191 Filamoeba nolandi strain CCAP1526 small subunit ribosomal RNA gene, complete sequence blastn 20145 532 1 Eukaryota Amoebozoa   Evosea Variosea     Filamoeba Filamoeba nolandi
19146192 19146192 PRJEB12237_P_NODE_7016_length_214_cov_1.787709_g6820_i0 PRJEB12237 7016 214 1.787709 3.82569726 Lamproderma scintillans 1115720 Evosea other_Eukaryota 169 1.7899999999999998e-37   NTclustered gi|2306687673|gb|MZ234286.1| 1115720 g6820 i0 80.93 23.6448598130841 215 39 100 2 1 214 306 93 Lamproderma scintillans voucher LE297459 translation elongation factor EF-1 alpha (EF1A) gene, partial cds blastn 5060 169 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Lamproderma Lamproderma scintillans
20112206 20112206 PRJEB12237_P_NODE_9796_length_171_cov_1.176471_g9600_i0 PRJEB12237 9796 171 1.176471 2.01176541 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 202 1.34e-47   NTclustered gi|330792727|ref|XM_003284391.1| 5786 g9600 i0 88.166 100.485380116959 169 20 99 0 1 169 388 220 Dictyostelium purpureum elongation factor 1 alpha (DICPUDRAFT_52946), mRNA blastn 17183 202 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
22972655 22972655 PRJEB12237_P_NODE_2439_length_451_cov_2.009615_g2243_i0 PRJEB12237 2439 451 2.009615 9.06336365 Ripella decalvata 2047822 Discosea other_Eukaryota 737 0   NTclustered gi|1269228431|gb|MF683556.1| 2047822 g2243 i0 96.637 99.310421286031 446 12 99 2 7 451 1572 1129 Ripella decalvata clone 26.2.11 18S ribosomal RNA gene, partial sequence blastn 44789 737 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;