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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJEB11748" and tax_phylum = "candidate division WWE3"

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tax_superkingdom 1

tax_phylum 1

  • candidate division WWE3 · 1 ✖

tax_clade 1

bioproject 1

  • PRJEB11748 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11493099 11493099 PRJEB11748_P_NODE_161450_length_321_cov_16.000000_g159267_i0 PRJEB11748 161450 321 16 51.36 candidate division WWE3 bacterium GW2011_GWC2_44_9 1619125 Bacteria Bacteria 401 2.5999999999999992e-107   NTclustered gi|1118703428|gb|KX123341.1| 1619125 g159267 i0 96.311 80.7102803738318 244 9 76 0 57 300 3301 3058 Candidate division WWE3 bacterium GW2011_GWC2_44_9 16S ribosomal RNA gene, partial sequence blastn 25908 401 1 Bacteria Bacteria candidate phyla   candidate division WWE3         candidate division WWE3 bacterium GW2011_GWC2_44_9

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;