RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB11748" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB11748 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3840909 3840909 PRJEB11748_P_NODE_143304_length_344_cov_1.929329_g141125_i0 PRJEB11748 143304 344 1.929329 6.63689176 Chlorobaculum parvum 274539 Bacteria Bacteria 431 3.58e-116   NTclustered gi|193085153|gb|CP001099.1| 517417 g141125 i0 89.851 0.973837209302326 335 34 97 0 1 335 312197 311863 Chlorobaculum parvum NCIB 8327, complete genome blastn 335 431 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum parvum
7362598 7362598 PRJEB11748_P_NODE_44966_length_644_cov_4.012007_g42885_i0 PRJEB11748 44966 644 4.012007 25.83732508 Pseudomonadati 3379134 Bacteria Bacteria 65.8 8.22e-6   NTclustered gi|559137949|tpe|HG782587.1| 290318 g42885 i0 97.436 2.13819875776398 39 0 6 1 71 108 364 402 TPA: Chlorobium phaeovibrioides DSM 265 transfer-messenger mRNA Chlor_phaeo_265, single chain mature transcript blastn 1377 65.8 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeovibrioides
14044757 14044757 PRJEB11748_P_NODE_242252_length_252_cov_1.570681_g240069_i0 PRJEB11748 242252 252 1.570681 3.95811612 Chlorobium phaeovibrioides 1094 Bacteria Bacteria 54.7 0.006   NTclustered gi|1746300117|gb|CP041698.1| 1094 g240069 i0 100 0.115079365079365 29 0 12 0 75 103 748093 748065 Chlorobium phaeovibrioides strain PhvTcv-s14 chromosome, complete genome blastn 29 54.7 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeovibrioides
20415293 20415293 PRJEB11748_P_NODE_141057_length_347_cov_2.202797_g138878_i0 PRJEB11748 141057 347 2.202797 7.64370559 Chlorobaculum parvum 274539 Bacteria Bacteria 457 5.96e-124   NTclustered gi|193085153|gb|CP001099.1| 517417 g138878 i0 90.882 1.06340057636888 340 31 98 0 1 340 312215 312554 Chlorobaculum parvum NCIB 8327, complete genome blastn 369 457 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum parvum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;