RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB11748" and tax_phylum = "Candidatus Binatota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Binatota · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB11748 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2567016 2567016 PRJEB11748_P_NODE_263743_length_238_cov_17.632768_g261560_i0 PRJEB11748 263743 238 17.632768 41.96598784 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 93.5 1.26e-14   NTclustered gi|2814788387|emb|OY762897.2| 2838779 g261560 i0 76.836 21.890756302521 177 33 73 8 1 173 594345 594173 MAG: Candidatus Binatia bacterium isolate 08c4157d-86a7-49cc-8b26-f3076a3ae996 genome assembly, chromosome: 1 blastn 5210 93.5 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
2567670 2567670 PRJEB11748_P_NODE_298723_length_220_cov_2.389937_g296540_i0 PRJEB11748 298723 220 2.389937 5.2578614 uncultured Candidatus Binatia bacterium 3036252 Bacteria Bacteria 76.8 1.16e-9   NTclustered gi|2891481979|emb|OZ219754.1| 3036252 g296540 i0 85.135 3.80454545454545 74 11 54 0 98 171 498992 498919 MAG: uncultured Candidatus Binatia bacterium isolate 58a26a4a-5c73-4e1d-804e-87f8126ae6b7 genome assembly, chromosome: 1 blastn 837 76.8 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       uncultured Candidatus Binatia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;