RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB11748" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB11748 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14042021 14042021 PRJEB11748_P_NODE_108272_length_400_cov_10.861357_g106098_i0 PRJEB11748 108272 400 10.861357 43.445428 Candidatus Gracilibacteria bacterium HOT-871 1540872 Bacteria Bacteria 643 4.969999999999999e-180   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g106098 i0 97.361 0.9475 379 8 95 2 1 378 1102212 1101835 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 379 643 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871
19140193 19140193 PRJEB11748_P_NODE_140736_length_347_cov_6.527972_g138557_i0 PRJEB11748 140736 347 6.527972 22.65206284 Candidatus Gracilibacteria bacterium HOT-871 1540872 Bacteria Bacteria 433 1e-116   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g138557 i0 90.826 10.193083573487 327 24 93 6 3 325 891329 891005 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 3537 433 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871
22659597 22659597 PRJEB11748_P_NODE_105218_length_406_cov_34.095652_g103046_i0 PRJEB11748 105218 406 34.095652 138.42834712 Bacteria 2 Bacteria Bacteria 161 6.2e-35   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g103046 i0 80.841 54.7364532019704 214 34 52 6 3 213 1250285 1250494 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 22223 161 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;