RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB11748" and tax_phylum = "Atribacterota"

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tax_superkingdom 1

tax_phylum 1

  • Atribacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB11748 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12771609 12771609 PRJEB11748_P_NODE_315391_length_212_cov_5.086093_g313208_i0 PRJEB11748 315391 212 5.086093 10.78251716 Atribacter laminatus 2847778 Bacteria Bacteria 313 7.74e-81   NTclustered gi|1940086973|gb|CP065383.1| 2847778 g313208 i0 96.335 0.900943396226415 191 5 89 2 23 211 1819765 1819955 Atribacter laminatus strain RT761 chromosome, complete genome blastn 191 313 1 Bacteria   Pseudomonadati Atribacterota Atribacteria Atribacterales Atribacteraceae Atribacter Atribacter laminatus
16595534 16595534 PRJEB11748_P_NODE_355754_length_195_cov_2.179104_g353571_i0 PRJEB11748 355754 195 2.179104 4.2492528 Atribacter laminatus 2847778 Bacteria Bacteria 196 7.36e-46   NTclustered gi|1940086973|gb|CP065383.1| 2847778 g353571 i0 87.209 0.882051282051282 172 22 88 0 24 195 1070145 1070316 Atribacter laminatus strain RT761 chromosome, complete genome blastn 172 196 1 Bacteria   Pseudomonadati Atribacterota Atribacteria Atribacterales Atribacteraceae Atribacter Atribacter laminatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;