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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJEB11748" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 7 ✖

bioproject 1

  • PRJEB11748 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17235 17235 PRJEB11748_P_NODE_270441_length_235_cov_1.350575_g268258_i0 PRJEB11748 270441 235 1.350575 3.17385125 Persicimonas caeni 2292766 Bacteria Bacteria 54.7 0.006   NTclustered gi|1695542189|gb|CP041186.1| 2292766 g268258 i0 100 0.246808510638298 29 0 12 0 36 64 1785079 1785107 Persicimonas caeni strain YN101 chromosome blastn 58 54.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni
1291046 1291046 PRJEB11748_P_NODE_245282_length_250_cov_1.534392_g243099_i0 PRJEB11748 245282 250 1.534392 3.83598 uncultured delta proteobacterium 34034 Bacteria Bacteria 73.1 1.74e-8   NTclustered gi|2874253659|emb|OY969087.1| 34034 g243099 i0 79.13 2.06 115 17 45 6 33 144 3125296 3125186 MAG: uncultured delta proteobacterium isolate MFD01721.bin.c.1 genome assembly, chromosome: 1 blastn 515 73.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
4811604 4811604 PRJEB11748_P_NODE_227464_length_262_cov_2.223881_g225281_i0 PRJEB11748 227464 262 2.223881 5.82656822 root 1 Root_unresolved Root_unresolved 409 1.23e-109   NTclustered gi|281324647|gb|GU236012.1| 34034 g225281 i0 97.119 92.7519083969466 243 5 92 2 22 262 534 776 Uncultured delta proteobacterium clone RLT34_02 16S ribosomal RNA gene, partial sequence blastn 24301 411 0.995133819951338 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
15317786 15317786 PRJEB11748_P_NODE_181453_length_300_cov_10.246862_g179270_i0 PRJEB11748 181453 300 10.246862 30.740586 uncultured delta proteobacterium HF0010_01J10 710820 Bacteria Bacteria 285 2.5299999999999996e-72   NTclustered gi|297180392|gb|GU474842.1| 710820 g179270 i0 87.705 135.316666666667 244 30 81 0 23 266 12899 12656 Uncultured delta proteobacterium HF0010_01J10 genomic sequence blastn 40595 285 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0010_01J10
20110619 20110619 PRJEB11748_P_NODE_280516_length_229_cov_3.672619_g278333_i0 PRJEB11748 280516 229 3.672619 8.41029751 Bacteria 2 Bacteria Bacteria 407 3.7799999999999995e-109   NTclustered gi|430803027|gb|KC011136.1| 34034 g278333 i0 98.69 100.275109170306 229 3 100 0 1 229 91 319 Uncultured delta proteobacterium clone bsc37 16S ribosomal RNA gene, partial sequence blastn 22963 407 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
21386497 21386497 PRJEB11748_P_NODE_322597_length_209_cov_3.560811_g320414_i0 PRJEB11748 322597 209 3.560811 7.44209499 root 1 Root_unresolved Root_unresolved 73.1 1.41e-8   NTclustered gi|58045904|gb|AY868169.1| 34034 g320414 i0 100 18.6267942583732 39 0 19 0 150 188 313 275 Uncultured delta proteobacterium clone I3K-0064 16S ribosomal RNA gene, partial sequence blastn 3893 73.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
24243850 24243850 PRJEB11748_P_NODE_314140_length_213_cov_1.684211_g311957_i0 PRJEB11748 314140 213 1.684211 3.58736943 Bradymonas sediminis 1548548 Bacteria Bacteria 93.5 1.1e-14   NTclustered gi|1406952946|gb|CP030032.1| 1548548 g311957 i0 82.569 0.7981220657277 109 15 50 4 63 169 1769039 1769145 Bradymonas sediminis strain FA350 chromosome, complete genome blastn 170 93.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Bradymonas Bradymonas sediminis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;