RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB11523" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 4 ✖

bioproject 1

  • PRJEB11523 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6391891 6391891 PRJEB11523_P_NODE_1926_length_394_cov_16.040580_g1848_i0 PRJEB11523 1926 394 16.04058 63.1998852 Methanobrevibacter sp. YE315 1609968 Archaea Archaea 442 1.9099999999999992e-119   NTclustered gi|985614202|gb|CP010834.1| 1609968 g1848 i0 87.99 6.33756345177665 383 34 94 6 1 371 1977219 1976837 Methanobrevibacter sp. YE315, complete genome blastn 2497 442 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315
10216509 10216509 PRJEB11523_P_NODE_3649_length_254_cov_11.058537_g3571_i0 PRJEB11523 3649 254 11.058537 28.08868398 Candidatus Nitrosotenuis cloacae 1603555 Archaea Archaea 270 5.8499999999999984e-68   NTclustered gi|808354332|gb|CP011097.2| 1603555 g3571 i0 89.623 0.834645669291339 212 22 83 0 20 231 471568 471357 Candidatus Nitrosotenuis cloacae strain SAT1, complete genome blastn 212 270 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis cloacae
17865510 17865510 PRJEB11523_P_NODE_5375_length_201_cov_1.763158_g5297_i0 PRJEB11523 5375 201 1.763158 3.54394758 Vulcanisaeta moutnovskia 985052 Archaea Archaea 52.8 0.017   NTclustered gi|323706731|gb|CP002529.1| 985053 g5297 i0 100 0.139303482587065 28 0 14 0 74 101 336127 336100 Vulcanisaeta moutnovskia 768-28, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta moutnovskia
20414389 20414389 PRJEB11523_P_NODE_6317_length_184_cov_0.859259_g6239_i0 PRJEB11523 6317 184 0.859259 1.58103656 Halosimplex pelagicum 869886 Archaea Archaea 76.8 9.31e-10   NTclustered gi|1870066477|gb|CP058909.1| 869886 g6239 i0 92.593 1.92391304347826 54 2 65 2 82 134 3650062 3650010 Halosimplex pelagicum strain R2 chromosome, complete genome blastn 354 76.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halosimplex Halosimplex pelagicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;