RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB11523" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB11523 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13728 13728 PRJEB11523_P_NODE_3161_length_281_cov_3.137931_g3083_i0 PRJEB11523 3161 281 3.137931 8.81758611 Philodina roseola 96448 Rotifera other_Eukaryota 174 5.3e-39   NTclustered gi|146157253|gb|EF484997.1| 96448 g3083 i0 90.076 0.466192170818505 131 13 47 0 126 256 1 131 Philodina roseola clone Pr_TEL_B telomeric repeat and subterminal DNA junction blastn 131 174 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
2563636 2563636 PRJEB11523_P_NODE_4843_length_214_cov_1.854545_g4765_i0 PRJEB11523 4843 214 1.854545 3.9687263 Philodina roseola 96448 Rotifera other_Eukaryota 239 1.35e-58   NTclustered gi|6018198|gb|AF143851.1|AF143851 96448 g4765 i0 89.418 36.7757009345794 189 20 88 0 26 214 295 483 Philodina roseola 82 kD heat shock protein 1 (hsp82-1) gene, partial cds blastn 7870 239 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
23934963 23934963 PRJEB11523_P_NODE_699_length_722_cov_10.713224_g635_i0 PRJEB11523 699 722 10.713224 77.34947728 Eurotatoria 2816136 Rotifera other_Eukaryota 1136 0   NTclustered gi|72153731|gb|DQ089739.1| 104782 g635 i0 96.382 39.1398891966759 691 24 96 1 11 701 2190 1501 Adineta vaga 28S ribosomal RNA gene, partial sequence blastn 28259 1147 0.990409764603313 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;