RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB11523" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB11523 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7360216 7360216 PRJEB11523_P_NODE_1766_length_419_cov_2.900000_g1688_i0 PRJEB11523 1766 419 2.9 12.151 Peronospora 70742 SAR_Eukaryotes SAR_Eukaryotes 752 0   NTclustered gi|1663822467|gb|MH730839.1| 120572 g1688 i0 99.045 99.9427207637231 419 4 100 0 1 419 344 762 Peronospora bulbocapni voucher GLM64102 28S ribosomal RNA gene, partial sequence blastn 41876 758 0.992084432717678 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora bulbocapni
22659523 22659523 PRJEB11523_P_NODE_5358_length_201_cov_4.289474_g5280_i0 PRJEB11523 5358 201 4.289474 8.62184274 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 303 4.37e-78   NTclustered gi|338798194|gb|HQ665255.1| 37553 g5280 i0 97.727 87.5621890547264 176 4 88 0 1 176 345 170 Saprolegnia monoica isolate CBS 539.67 28S large subunit ribosomal RNA gene, partial sequence blastn 17600 303 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia monoica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;