RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB11523" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB11523 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10216510 10216510 PRJEB11523_P_NODE_3669_length_253_cov_20.377451_g3591_i0 PRJEB11523 3669 253 20.377451 51.55495103 Rhopilema esculentum 499914 Cnidaria other_Eukaryota 62.1 3.81e-5   NTclustered gi|2729078193|ref|XM_065201444.1| 499914 g3591 i0 100 0.130434782608696 33 0 13 0 78 110 1792 1760 PREDICTED: Rhopilema esculentum serine/threonine-protein kinase 40-like (LOC135685480), mRNA blastn 33 62.1 1 Eukaryota Opisthokonta Metazoa Cnidaria Scyphozoa Rhizostomeae Rhizostomatidae Rhopilema Rhopilema esculentum
20109040 20109040 PRJEB11523_P_NODE_6436_length_181_cov_5.393939_g6358_i0 PRJEB11523 6436 181 5.393939 9.76302959 Cnidaria 6073 Cnidaria other_Eukaryota 122 1.16e-23   NTclustered gi|1347759488|gb|MG979306.1| 340365 g6358 i0 89.32 53.0773480662983 103 4 55 5 1 100 195 97 Scolionema suvaense isolate AGC0509 large subunit ribosomal RNA gene, partial sequence blastn 9607 122 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Limnomedusae Olindiidae Scolionema Scolionema suvaense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;