RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB11523" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB11523 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12461635 12461635 PRJEB11523_P_NODE_7550_length_167_cov_0.864407_g7472_i0 PRJEB11523 7550 167 0.864407 1.44355969 Sulfurospirillum 57665 Bacteria Bacteria 176 7.969999999999999e-40   NTclustered gi|1729059542|gb|CP042966.1| 66821 g7472 i0 88.514 2.69461077844311 148 14 87 1 1 145 973540 973687 Sulfurospirillum multivorans strain N chromosome, complete genome blastn 450 176 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum multivorans
12767313 12767313 PRJEB11523_P_NODE_6651_length_178_cov_2.077519_g6573_i0 PRJEB11523 6651 178 2.077519 3.69798382 uncultured Aliarcobacter sp. 2321118 Bacteria Bacteria 278 2.28e-70   NTclustered gi|2621785459|emb|OY781917.1| 2321118 g6573 i0 99.346 323.938202247191 153 1 86 0 24 176 1466268 1466116 MAG: uncultured Aliarcobacter sp. isolate 35e71162-57ce-4606-8f28-3f72018c63bd genome assembly, chromosome: 2 blastn 57661 278 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter uncultured Aliarcobacter sp.
15010377 15010377 PRJEB11523_P_NODE_5352_length_201_cov_7.828947_g5274_i0 PRJEB11523 5352 201 7.828947 15.73618347 Sulfurospirillum 57665 Bacteria Bacteria 171 4.6299999999999996e-38   NTclustered gi|1729059542|gb|CP042966.1| 66821 g5274 i0 87.013 1.67164179104478 154 17 75 2 27 177 969451 969604 Sulfurospirillum multivorans strain N chromosome, complete genome blastn 336 171 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum multivorans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;