RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB11523" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB11523 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3533157 3533157 PRJEB11523_P_NODE_4543_length_221_cov_9.755814_g4465_i0 PRJEB11523 4543 221 9.755814 21.56034894 Peredibacter 263370 Bacteria Bacteria 226 1.0899999999999999e-54   NTclustered gi|2631252187|gb|CP139487.1| 28202 g4465 i0 87.629 3.40723981900452 194 24 88 0 5 198 2994695 2994888 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 753 226 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
4810450 4810450 PRJEB11523_P_NODE_6844_length_175_cov_5.412698_g6766_i0 PRJEB11523 6844 175 5.412698 9.4722215 root 1 Root_unresolved Root_unresolved 278 2.23e-70   NTclustered gi|636559085|ref|NR_115142.1| 960 g6766 i0 99.346 90.0571428571429 153 1 87 0 1 153 356 204 Bacteriovorax stolpii strain Uki2 16S ribosomal RNA, partial sequence blastn 15760 278 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
7360223 7360223 PRJEB11523_P_NODE_4546_length_221_cov_7.459302_g4468_i0 PRJEB11523 4546 221 7.459302 16.48505742 Bacteriovorax 146784 Bacteria Bacteria 313 8.14e-81   NTclustered gi|1700689994|gb|CP030035.1| 960 g4468 i0 94.975 116.941176470588 199 10 90 0 1 199 1660841 1660643 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 25844 313 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
23934967 23934967 PRJEB11523_P_NODE_8359_length_162_cov_2.814159_g8281_i0 PRJEB11523 8359 162 2.814159 4.55893758 Bacteriovorax 146784 Bacteria Bacteria 93.5 7.94e-15   NTclustered gi|1700689994|gb|CP030035.1| 960 g8281 i0 80.8 26.037037037037 125 18 75 6 3 124 1660563 1660442 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 4218 93.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;