RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB11523" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB11523 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1288024 1288024 PRJEB11523_P_NODE_5482_length_198_cov_21.644295_g5404_i0 PRJEB11523 5482 198 21.644295 42.8557041 Paludibaculum fermentans 1473598 Bacteria Bacteria 150 5.919999999999999e-32   NTclustered gi|1929489624|gb|CP063849.1| 1473598 g5404 i0 82.486 8.91414141414141 177 25 87 4 26 198 4786264 4786090 Paludibaculum fermentans strain P105 chromosome, complete genome blastn 1765 150 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae Paludibaculum Paludibaculum fermentans
7665994 7665994 PRJEB11523_P_NODE_6547_length_180_cov_1.557252_g6469_i0 PRJEB11523 6547 180 1.557252 2.8030536 Acidobacteriota bacterium 1978231 Bacteria Bacteria 211 2.38e-50   NTclustered gi|1958093598|gb|CP065003.1| 1978231 g6469 i0 90.625 26.8666666666667 160 14 88 1 1 159 317455 317296 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.185_cln chromosome, complete genome blastn 4836 211 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
8940762 8940762 PRJEB11523_P_NODE_6928_length_174_cov_3.240000_g6850_i0 PRJEB11523 6928 174 3.24 5.6376 Acidobacteriota bacterium 1978231 Bacteria Bacteria 255 1.04e-63   NTclustered gi|1958098837|gb|CP065005.1| 1978231 g6850 i0 93.605 232.201149425287 172 10 98 1 1 171 4649474 4649303 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.198_cln chromosome, complete genome blastn 40403 255 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
12767299 12767299 PRJEB11523_P_NODE_5511_length_198_cov_2.348993_g5433_i0 PRJEB11523 5511 198 2.348993 4.65100614 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 117 6e-22   NTclustered gi|2874254056|emb|OY970380.1| 2651171 g5433 i0 82.222 2.74747474747475 135 24 68 0 37 171 3528567 3528433 MAG: Thermoanaerobaculia bacterium isolate MFD05537.bin.c.2 genome assembly, chromosome: 1 blastn 544 117 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;