RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJEB11523" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 7 ✖

bioproject 1

  • PRJEB11523 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2257746 2257746 PRJEB11523_P_NODE_4482_length_224_cov_1.051429_g4404_i0 PRJEB11523 4482 224 1.051429 2.35520096 Coccomyxa 41891 Plants Plants 337 4.909999999999999e-88   NTclustered gi|1601875646|gb|MK694759.1| 2315456 g4404 i0 93.75 100.133928571429 224 14 100 0 1 224 4299 4076 Coccomyxa sp. Obi small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 22430 337 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa sp. Obi
11491741 11491741 PRJEB11523_P_NODE_6450_length_181_cov_2.840909_g6372_i0 PRJEB11523 6450 181 2.840909 5.14204529 Chlorogonium euchlorum 52028 Plants Plants 281 1.8e-71   NTclustered gi|2324954163|gb|OP597711.1| 52028 g6372 i0 97.576 3.19337016574586 165 2 91 2 18 181 3675 3838 Chlorogonium euchlorum chloroplast, partial genome blastn 578 281 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Chlorogonium Chlorogonium euchlorum
15315964 15315964 PRJEB11523_P_NODE_3153_length_281_cov_16.797414_g3075_i0 PRJEB11523 3153 281 16.797414 47.20073334 Pithophora roettleri 926344 Plants Plants 111 4.21e-20   NTclustered gi|1678088264|gb|MN017042.1| 926344 g3075 i0 85.714 10.2491103202847 105 15 37 0 23 127 3922 4026 Pithophora roettleri isolate Ogeechee small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2880 111 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Cladophorales Pithophoraceae Pithophora Pithophora roettleri
19139233 19139233 PRJEB11523_P_NODE_2116_length_371_cov_34.149068_g2038_i0 PRJEB11523 2116 371 34.149068 126.69304228 Trebouxia sp. SL0000003 3350044 Plants Plants 569 7.88e-158   NTclustered gi|2917929623|emb|OZ234911.1| 3350044 g2038 i0 100 0.830188679245283 308 0 83 0 41 348 1745611 1745918 Trebouxia sp. SL0000003 genome assembly, chromosome: 6 blastn 308 569 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
24239651 24239651 PRJEB11523_P_NODE_4140_length_235_cov_2.010753_g4062_i0 PRJEB11523 4140 235 2.010753 4.72526955 uncultured Apatococcus 1229086 Plants Plants 429 8.33e-116   NTclustered gi|1031961068|gb|KX025109.1| 1229086 g4062 i0 99.574 99.9574468085106 235 1 100 0 1 235 1485 1251 Uncultured Apatococcus clone GOGs_K08 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence blastn 23490 429 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Apatococcus
24239656 24239656 PRJEB11523_P_NODE_4820_length_214_cov_14.521212_g4742_i0 PRJEB11523 4820 214 14.521212 31.07539368 Hazenia capsulata 2202518 Plants Plants 213 8.17e-51   NTclustered gi|17028245|gb|L42837.1|CMKCPRGOL 2202518 g4742 i0 92.568 129.981308411215 148 11 69 0 24 171 1337 1484 Hazenia capsulata large subunit ribosomal RNA (rrnL) gene, partial sequence; chloroplast blastn 27816 213 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Hazeniaceae Hazenia Hazenia capsulata
25208594 25208594 PRJEB11523_P_NODE_8340_length_162_cov_4.530973_g8262_i0 PRJEB11523 8340 162 4.530973 7.34017626 Selenastraceae 35466 Plants Plants 272 9.51e-69   NTclustered gi|523583551|gb|KC145448.1| 52960 g8262 i0 98.693 94.6172839506173 153 2 94 0 10 162 138 290 Ankistrodesmus falcatus strain UTEX 101 28S ribosomal RNA gene, partial sequence blastn 15328 272 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Ankistrodesmus Ankistrodesmus falcatus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;