RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB11523" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJEB11523 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5116138 5116138 PRJEB11523_P_NODE_5305_length_202_cov_17.830065_g5227_i0 PRJEB11523 5305 202 17.830065 36.016731299999996 Fuerstiella marisgermanici 1891926 Bacteria Bacteria 171 4.65e-38   NTclustered gi|1140105870|gb|CP017641.1| 1891926 g5227 i0 84.746 69.3811881188119 177 19 86 8 11 183 5362227 5362055 Fuerstiella marisgermanici strain NH11 chromosome, complete genome blastn 14015 171 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Fuerstiella Fuerstiella marisgermanici
10216520 10216520 PRJEB11523_P_NODE_4609_length_219_cov_6.776471_g4531_i0 PRJEB11523 4609 219 6.776471 14.84047149 Luteolibacter luteus 2728835 Bacteria Bacteria 257 3.83e-64   NTclustered gi|1835317346|gb|CP051774.1| 2728835 g4531 i0 95.122 221.433789954338 164 6 74 1 22 183 3804904 3805067 Luteolibacter luteus strain G-1-1-1 chromosome, complete genome blastn 48494 257 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter luteus
10216526 10216526 PRJEB11523_P_NODE_5129_length_206_cov_9.146497_g5051_i0 PRJEB11523 5129 206 9.146497 18.84178382 Bythopirellula goksoeyrii 1400387 Bacteria Bacteria 285 1.6299999999999998e-72   NTclustered gi|1727544988|gb|CP042913.1| 1400387 g5051 i0 94.118 107.223300970874 187 11 91 0 12 198 5093774 5093588 Bythopirellula goksoeyrii strain Pr1d chromosome blastn 22088 285 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Lacipirellulaceae Bythopirellula Bythopirellula goksoeyrii
17865520 17865520 PRJEB11523_P_NODE_6155_length_186_cov_5.306569_g6077_i0 PRJEB11523 6155 186 5.306569 9.87021834 Pirellula sp. SH-Sr6A 1632865 Bacteria Bacteria 167 5.4399999999999995e-37   NTclustered gi|1015448679|gb|CP011272.1| 1632865 g6077 i0 84.848 0.887096774193548 165 25 89 0 1 165 3097593 3097757 Pirellula sp. SH-Sr6A, complete genome blastn 165 167 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Pirellula Pirellula sp. SH-Sr6A

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;