RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB11523" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJEB11523 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20109038 20109038 PRJEB11523_P_NODE_5936_length_189_cov_23.007143_g5858_i0 PRJEB11523 5936 189 23.007143 43.48350027 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 239 1.16e-58   NTclustered gi|1207899568|ref|XR_002460820.1| 347515 g5858 i0 92.857 109.444444444444 168 7 86 4 24 186 1585 1752 Leishmania major strain Friedlin 28S ribosomal RNA (LSU-alpha) partial rRNA blastn 20685 239 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania major
21384653 21384653 PRJEB11523_P_NODE_4157_length_234_cov_8.016216_g4079_i0 PRJEB11523 4157 234 8.016216 18.75794544 Naegleria 5761 Heterolobosea other_Eukaryota 366 6.59e-97   NTclustered gi|2618963742|gb|OR769034.1| 5762 g4079 i0 99.502 10.2735042735043 201 1 86 0 13 213 4279 4079 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 2404 366 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
21384658 21384658 PRJEB11523_P_NODE_5497_length_198_cov_4.174497_g5419_i0 PRJEB11523 5497 198 4.174497 8.26550406 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 228 2.659999999999999e-55   NTclustered gi|169656123|gb|EU429363.1| 5659 g5419 i0 95.804 82.3636363636364 143 3 72 3 7 148 309 449 Leishmania amazonensis clone AR249 28S ribosomal RNA (LSU-beta)-like gene, partial sequence blastn 16308 230 0.991304347826087 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania amazonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;